C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139613 SMARCC2 9606 - 12:56162983-56189567 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267064 SMARCC2-001 56163345-56189548 protein_coding
  ENST00000347471 SMARCC2-002 56163330-56189548 protein_coding
  ENST00000394023 SMARCC2-003 56162983-56189567 protein_coding
  ENST00000547356 SMARCC2-007 56185790-56189520 retained_intron
  ENST00000548130 SMARCC2-014 56171877-56181126 retained_intron
  ENST00000549209 SMARCC2-016 56171394-56174713 processed_transcript
  ENST00000549757 SMARCC2-011 56178819-56184248 retained_intron
  ENST00000550150 SMARCC2-005 56183324-56189483 retained_intron
  ENST00000550164 SMARCC2-006 56163328-56189476 protein_coding
  ENST00000550519 SMARCC2-009 56181748-56189543 nonsense_mediated_decay
  ENST00000550859 SMARCC2-010 56181748-56189391 processed_transcript
  ENST00000552566 SMARCC2-013 56174531-56178631 retained_intron
  ENST00000552627 SMARCC2-008 56183879-56185223 retained_intron
  ENST00000552674 SMARCC2-004 56163345-56189473 nonsense_mediated_decay
  ENST00000552931 SMARCC2-015 56172239-56174732 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartMuscleOvaryENST00000267064ENST00000394023ENST00000550164
Transcript ID Bladder Brain Breast Heart Muscle Ovary
ENST00000267064 4.486±0.00 N/A N/A N/A N/A N/A
ENST00000394023 2.016±0.00 29.737±0.00 N/A 15.269±0.00 18.139±0.00 N/A
ENST00000550164 N/A 8.704±0.00 5.397±0.00 2.401±0.00 N/A 8.993±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0016514 IDA SWI/SNF complex
GO:0017053 IPI transcriptional repressor complex
GO:0021882 IEA regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077946 smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 protein_coding Danio_rerio
ENSMUSG00000025369 Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 protein_coding Mus_musculus

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