C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394023 SMARCC2-003 ENSG00000139613 9606 - 12:56162983-56189567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartMuscleENST00000394023
Transcript ID Bladder Brain Heart Muscle
ENST00000394023 2.016±0.00 29.737±0.00 15.269±0.00 18.139±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0016514 IDA SWI/SNF complex
GO:0017053 IPI transcriptional repressor complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099131 Smarcc2-202 protein_coding Mus_musculus 0 4490
ENSMUST00000026433 Smarcc2-201 protein_coding Mus_musculus 0 2407
ENSMUST00000105235 Smarcc2-203 protein_coding Mus_musculus 0 2407

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