C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025369 Smarcc2 10090 + 10:128459236-128490173 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026433 Smarcc2-201 128459236-128490173 protein_coding
  ENSMUST00000099131 Smarcc2-202 128459236-128490173 protein_coding
  ENSMUST00000105235 Smarcc2-203 128459236-128490173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026433ENSMUST00000099131ENSMUST00000105235
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026433 25.253±6.56 19.068±4.54 11.952±0.26 17.990±4.59 18.679±4.33 N/A 9.197±1.17 4.334±0.00 N/A 15.391±3.80 3.940±1.14 20.815±15.28 12.581±9.69 18.819±0.00
ENSMUST00000099131 N/A 6.243±0.00 4.271±0.23 77.475±17.09 4.125±0.89 3.885±0.00 3.936±0.53 N/A N/A N/A 5.403±1.51 7.224±0.09 N/A N/A
ENSMUST00000105235 14.273±3.00 30.189±4.27 18.392±1.42 48.804±14.99 24.010±11.11 30.792±3.12 3.846±0.94 26.687±1.24 19.783±2.96 21.189±2.78 2.458±0.61 30.732±10.61 12.678±4.39 36.169±14.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039G CIL_00039G_0002 CGP 10:128459236-128493875

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0016514 IDA SWI/SNF complex
GO:0017053 IEA transcriptional repressor complex
GO:0021882 IMP regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077946 smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 protein_coding Danio_rerio
ENSG00000139613 SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 protein_coding Homo_sapiens

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