C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypeptide N-acetylgalactosaminyltransferase 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139629 GALNT6 9606 - 12:51351247-51392867 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356317 GALNT6-001 51353753-51391409 protein_coding
  ENST00000543196 GALNT6-002 51351247-51383563 protein_coding
  ENST00000603188 GALNT6-012 51379594-51391434 protein_coding
  ENST00000603203 GALNT6-018 51379786-51391651 processed_transcript
  ENST00000603482 GALNT6-021 51382335-51391675 processed_transcript
  ENST00000603563 GALNT6-015 51379616-51391299 protein_coding
  ENST00000603641 GALNT6-003 51354271-51379781 nonsense_mediated_decay
  ENST00000603680 GALNT6-004 51353769-51360226 retained_intron
  ENST00000604381 GALNT6-008 51379370-51391652 protein_coding
  ENST00000604426 GALNT6-005 51379546-51392867 protein_coding
  ENST00000604506 GALNT6-017 51379712-51391436 protein_coding
  ENST00000604847 GALNT6-011 51379413-51391436 protein_coding
  ENST00000605055 GALNT6-009 51379713-51391652 protein_coding
  ENST00000605089 GALNT6-020 51379841-51391390 processed_transcript
  ENST00000605138 GALNT6-016 51379664-51391629 protein_coding
  ENST00000605367 GALNT6-013 51382461-51391404 processed_transcript
  ENST00000605617 GALNT6-007 51379576-51391663 protein_coding
  ENST00000605720 GALNT6-010 51382461-51391591 processed_transcript
  ENST00000605822 GALNT6-006 51379813-51391955 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356317ENST00000543196ENST00000603680ENST00000604847
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.376±0.00 N/A N/A
ENST00000543196 0.201±0.00 2.252±0.00 0.343±0.00 1.189±0.87 1.198±0.00 0.149±0.13 1.874±0.00 0.360±0.02 3.292±0.00 0.165±0.00 1.396±0.51 5.529±1.93 1.741±0.00
ENST00000603680 N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A N/A
ENST00000604847 N/A N/A N/A N/A N/A 0.137±0.00 N/A 3.122±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JU CIL_0006JU_0001 CGP 12:51328443-51392867
CIL_0006JV CIL_0006JV_0001 CGP 12:51351247-51515763

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IDA Golgi apparatus
GO:0006493 TAS protein O-linked glycosylation
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000037280 Galnt6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 protein_coding Mus_musculus

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