C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037280 Galnt6 10090 - 15:100691813-100729376 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052069 Galnt6-002 100691815-100729376 protein_coding
  ENSMUST00000159715 Galnt6-001 100691813-100729376 protein_coding
  ENSMUST00000161514 Galnt6-003 100692864-100720477 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052069ENSMUST00000159715ENSMUST00000161514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052069 0.237±0.21 0.139±0.03 4.515±0.57 0.380±0.52 1.676±1.38 11.993±4.17 0.140±0.07 0.055±0.00 0.173±0.12 1.043±0.19 0.232±0.39 0.157±0.05 4.935±4.11 0.184±0.09
ENSMUST00000159715 0.089±0.00 0.139±0.04 3.550±0.55 0.012±0.01 2.038±1.77 N/A 0.094±0.00 0.056±0.01 0.125±0.11 0.913±0.00 0.009±0.01 0.283±0.29 1.336±1.13 0.125±0.02
ENSMUST00000161514 0.093±0.00 0.416±0.21 N/A 0.026±0.00 1.544±0.61 5.454±1.70 0.094±0.00 0.299±0.10 0.065±0.04 0.595±0.00 0.022±0.00 0.331±0.24 N/A 0.133±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JU CIL_0006JU_0002 CGP 15:100674425-100729376
CIL_0006JV CIL_0006JV_0002 CGP 15:100691813-100823968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000139629 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 protein_coding Homo_sapiens

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