C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543196 GALNT6-002 ENSG00000139629 9606 - 12:51351247-51383563 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000543196
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000543196 0.201±0.00 2.252±0.00 0.343±0.00 1.189±0.87 1.198±0.00 0.149±0.13 1.874±0.00 0.360±0.02 3.292±0.00 0.165±0.00 1.396±0.51 5.529±1.93 1.741±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JU CIL_0006JU_0001 CGP 12:51328443-51392867
CIL_0006JV CIL_0006JV_0001 CGP 12:51351247-51515763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IDA Golgi apparatus
GO:0006493 TAS protein O-linked glycosylation
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161514 Galnt6-003 protein_coding Mus_musculus 0 2141
ENSMUST00000052069 Galnt6-002 protein_coding Mus_musculus 0 2141
ENSMUST00000159715 Galnt6-001 protein_coding Mus_musculus 0 2141
ENSMUST00000138089 Baz2b-013 processed_transcript Mus_musculus 0.000002 60
ENSMUST00000134908 Baz2b-012 processed_transcript Mus_musculus 0.000002 60
ENSMUST00000151756 Baz2b-011 processed_transcript Mus_musculus 0.000002 60

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