C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 12 (potassium/chloride transporter), member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140199 SLC12A6 9606 - 15:34229996-34338060 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290209 SLC12A6-001 34229996-34318779 protein_coding
  ENST00000354181 SLC12A6-003 34233259-34337752 protein_coding
  ENST00000397702 SLC12A6-008 34233259-34338060 protein_coding
  ENST00000397707 SLC12A6-002 34233259-34336844 protein_coding
  ENST00000458406 SLC12A6-006 34233259-34337760 protein_coding
  ENST00000558589 SLC12A6-004 34233881-34337757 protein_coding
  ENST00000558667 SLC12A6-009 34233712-34338057 protein_coding
  ENST00000558950 SLC12A6-015 34238232-34241044 retained_intron
  ENST00000559076 SLC12A6-016 34237084-34238396 retained_intron
  ENST00000559236 SLC12A6-011 34260930-34338057 protein_coding
  ENST00000559441 SLC12A6-019 34237481-34238710 retained_intron
  ENST00000559484 SLC12A6-013 34260978-34337742 protein_coding
  ENST00000559523 SLC12A6-005 34233259-34337760 nonsense_mediated_decay
  ENST00000559664 SLC12A6-007 34233259-34337786 nonsense_mediated_decay
  ENST00000560023 SLC12A6-014 34241063-34245340 retained_intron
  ENST00000560164 SLC12A6-017 34233262-34299658 protein_coding
  ENST00000560332 SLC12A6-018 34256236-34299636 protein_coding
  ENST00000560611 SLC12A6-010 34233259-34336844 protein_coding
  ENST00000561080 SLC12A6-020 34233263-34338057 nonsense_mediated_decay
  ENST00000561120 SLC12A6-012 34258873-34338057 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290209ENST00000397702ENST00000559664ENST00000561080
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290209 3.856±0.00 4.523±0.00 N/A 1.622±0.43 2.386±1.03 0.716±0.00 1.419±0.94 0.742±0.00 1.500±0.19 0.691±0.00 2.468±0.55 2.151±0.19 N/A
ENST00000397702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.828±0.00
ENST00000559664 N/A 2.640±0.00 2.774±0.00 1.779±0.00 0.991±0.00 0.803±0.00 0.638±0.00 1.904±0.00 1.685±0.00 1.460±0.00 N/A N/A 15.596±0.00
ENST00000561080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.925±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 NAS angiogenesis
GO:0005215 IEA transporter activity
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0006811 IDA:IEA ion transport
GO:0006813 IEA potassium ion transport
GO:0006821 IDA chloride transport
GO:0010107 IDA potassium ion import
GO:0015079 IDA potassium ion transmembrane transporter activity
GO:0015377 IEA cation:chloride symporter activity
GO:0015379 IDA potassium:chloride symporter activity
GO:0016020 IEA membrane
GO:0016021 NAS:IEA integral component of membrane
GO:0016323 ISS basolateral plasma membrane
GO:0019901 IPI protein kinase binding
GO:0035826 IMP rubidium ion transport
GO:0035827 IMP rubidium ion transmembrane transporter activity
GO:0055085 IEA:TAS transmembrane transport
GO:0071476 IMP cellular hypotonic response
GO:0071477 IDA cellular hypotonic salinity response
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078892 SLC12A6 (1 of 2) solute carrier family 12 (potassium/chloride transporter), member 6 protein_coding Danio_rerio
ENSDARG00000087482 SLC12A6 (2 of 2) solute carrier family 12 (potassium/chloride transporter), member 6 protein_coding Danio_rerio
ENSMUSG00000027130 Slc12a6 solute carrier family 12, member 6 protein_coding Mus_musculus
ENSMUSG00000096764 Gm21985 predicted gene 21985 protein_coding Mus_musculus

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