C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 12, member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027130 Slc12a6 10090 + 2:112265825-112363163 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028549 Slc12a6-001 112266819-112363156 protein_coding
  ENSMUST00000053666 Slc12a6-004 112284577-112363156 protein_coding
  ENSMUST00000110987 Slc12a6-005 112266742-112356029 protein_coding
  ENSMUST00000110991 Slc12a6-003 112265825-112359127 protein_coding
  ENSMUST00000132752 Slc12a6-007 112352526-112354238 processed_transcript
  ENSMUST00000133840 Slc12a6-008 112346995-112351633 processed_transcript
  ENSMUST00000137896 Slc12a6-006 112356195-112363163 retained_intron
  ENSMUST00000156470 Slc12a6-009 112354202-112356887 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028549ENSMUST00000053666ENSMUST00000110991ENSMUST00000137896
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028549 6.081±0.62 5.180±0.62 N/A 6.235±1.49 9.848±4.76 4.909±0.00 4.364±1.81 4.427±0.58 1.945±0.41 5.775±0.97 3.139±1.14 6.876±1.58 3.110±1.07 3.857±2.14
ENSMUST00000053666 N/A N/A 19.934±2.78 N/A N/A 5.910±1.02 N/A 5.839±1.41 2.727±0.85 5.343±0.07 N/A 3.818±0.00 3.320±0.74 0.784±0.00
ENSMUST00000110991 6.991±1.03 2.914±0.00 N/A 6.468±0.23 9.000±2.68 4.096±0.79 2.520±0.00 4.606±0.33 2.400±0.31 12.944±0.59 N/A 11.285±2.96 N/A 4.701±2.43
ENSMUST00000137896 N/A N/A 12.178±0.44 5.706±1.09 9.927±0.26 N/A N/A N/A 3.268±0.50 7.025±0.42 N/A 4.401±1.49 N/A 0.888±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZB CIL_0000ZB_0002 CGP 2:112265825-112406319

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006813 IEA potassium ion transport
GO:0006821 ISS chloride transport
GO:0015379 ISS potassium:chloride symporter activity
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0071477 ISS cellular hypotonic salinity response
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078892 SLC12A6 (1 of 2) solute carrier family 12 (potassium/chloride transporter), member 6 protein_coding Danio_rerio
ENSDARG00000087482 SLC12A6 (2 of 2) solute carrier family 12 (potassium/chloride transporter), member 6 protein_coding Danio_rerio
ENSG00000140199 SLC12A6 solute carrier family 12 (potassium/chloride transporter), member 6 protein_coding Homo_sapiens

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