C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hyaluronan and proteoglycan link protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140511 HAPLN3 9606 - 15:88877288-88895626 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359595 HAPLN3-001 88877288-88895626 protein_coding
  ENST00000558770 HAPLN3-002 88877295-88895531 nonsense_mediated_decay
  ENST00000562281 HAPLN3-004 88879119-88895533 protein_coding
  ENST00000562889 HAPLN3-003 88877831-88895597 protein_coding
  ENST00000563808 HAPLN3-005 88881145-88895513 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359595ENST00000558770ENST00000562281ENST00000562889ENST00000563808
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359595 3.547±0.00 12.930±0.00 0.894±0.00 2.202±0.00 1.453±1.39 N/A 0.457±0.00 0.027±0.00 17.031±0.00 0.862±0.00 3.261±1.91 5.861±4.12 4.307±0.00
ENST00000558770 0.365±0.00 N/A 0.341±0.00 2.514±0.00 0.160±0.00 0.062±0.00 0.203±0.00 0.027±0.00 1.558±1.08 0.281±0.00 0.774±0.39 N/A 0.254±0.14
ENST00000562281 N/A N/A 0.059±0.00 4.635±0.00 2.189±0.00 1.307±0.00 N/A 0.235±0.00 N/A N/A 4.825±0.00 2.183±0.00 0.305±0.00
ENST00000562889 1.577±0.00 N/A 0.504±0.00 N/A 0.783±0.00 N/A N/A N/A N/A N/A N/A 1.473±0.00 0.318±0.00
ENST00000563808 N/A N/A N/A 0.906±0.00 N/A 0.105±0.00 N/A 1.796±0.00 N/A 1.194±0.00 1.251±0.00 N/A 0.286±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011L CIL_00011L_0001 CGP 15:88803443-88895626
CIL_00011I CIL_00011I_0001 CGP 15:88877288-88913411

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005540 IEA hyaluronic acid binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0007155 IEA cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045802 hapln3 hyaluronan and proteoglycan link protein 3 protein_coding Danio_rerio
ENSMUSG00000030606 Hapln3 hyaluronan and proteoglycan link protein 3 protein_coding Mus_musculus

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