C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00011I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140511-ENSG00000140545 CGP 9606 15:88877288-88913411
GeneTranscriptPositionBiotype
ENSG00000140511 (HAPLN3)
hyaluronan and proteoglycan link protein 3 		ENST00000359595 (HAPLN3-001) 88877288-88895626 protein_coding
ENST00000558770 (HAPLN3-002) 88877295-88895531 nonsense_mediated_decay
ENST00000562281 (HAPLN3-004) 88879119-88895533 protein_coding
ENST00000562889 (HAPLN3-003) 88877831-88895597 protein_coding
ENST00000563808 (HAPLN3-005) 88881145-88895513 retained_intron
ENSG00000140545 (MFGE8)
milk fat globule-EGF factor 8 protein 		ENST00000268150 (MFGE8-001) 88898714-88913411 protein_coding
ENST00000268151 (MFGE8-004) 88898713-88913381 protein_coding
ENST00000542878 (MFGE8-003) 88899315-88913379 protein_coding
ENST00000557944 (MFGE8-013) 88910780-88913362 retained_intron
ENST00000558018 (MFGE8-005) 88898683-88913379 nonsense_mediated_decay
ENST00000558029 (MFGE8-007) 88901551-88913362 protein_coding
ENST00000558352 (MFGE8-002) 88906063-88913379 retained_intron
ENST00000558773 (MFGE8-012) 88910204-88913317 retained_intron
ENST00000559143 (MFGE8-011) 88909792-88910257 retained_intron
ENST00000559259 (MFGE8-010) 88905382-88906716 retained_intron
ENST00000559770 (MFGE8-009) 88906615-88910125 retained_intron
ENST00000559997 (MFGE8-014) 88905399-88913379 processed_transcript
ENST00000560553 (MFGE8-008) 88903790-88904928 processed_transcript
ENST00000560937 (MFGE8-006) 88899298-88901960 retained_intron
ENST00000566497 (MFGE8-015) 88898715-88913381 protein_coding
ENST00000613965 (MFGE8-017) 88902183-88906661 nonsense_mediated_decay
ENST00000617199 (MFGE8-016) 88902183-88904646 processed_transcript
CIL_00011I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030606-ENSMUSG00000030605 CGP 10090 7:79117027-79149060
GeneTranscriptPositionBiotype
ENSMUSG00000030605 (Mfge8)
milk fat globule-EGF factor 8 protein 		ENSMUST00000032825 (Mfge8-201) 79133769-79149060 protein_coding
ENSMUST00000107409 (Mfge8-202) 79133769-79149060 protein_coding
ENSMUSG00000030606 (Hapln3)
hyaluronan and proteoglycan link protein 3 		ENSMUST00000032827 (Hapln3-201) 79117027-79131018 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00011I_0001ENSG00000140511ENST00000359595ENST00000558770ENST00000562281ENST00000562889ENST00000563808ENSG00000140545ENST00000268150ENST00000268151ENST00000542878ENST00000557944ENST00000558018ENST00000558029ENST00000558352ENST00000558773ENST00000559143ENST00000559259ENST00000559770ENST00000559997ENST00000560553ENST00000560937ENST00000566497ENST00000613965ENST00000617199CIL_00011I_0002ENSMUSG00000030605ENSMUST00000032825ENSMUST00000107409ENSMUSG00000030606ENSMUST00000032827
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00011I_0001ENSG00000140511ENST00000359595ENST00000558770ENST00000562281ENST00000562889ENST00000563808ENSG00000140545ENST00000268150ENST00000268151ENST00000542878ENST00000558018ENST00000558029ENST00000559770ENST00000560937ENST00000566497ENST00000613965ENST00000617199CIL_00011I_0002ENSMUSG00000030605ENSMUST00000032825ENSMUST00000107409ENSMUSG00000030606ENSMUST00000032827
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140511 ENST00000359595 3.547±0.00 12.930±0.00 N/A 0.894±0.00 2.202±0.00 1.453±1.39 N/A 0.457±0.00 0.027±0.00 17.031±0.00 0.862±0.00 3.261±1.91 5.861±4.12 4.307±0.00
ENST00000558770 0.365±0.00 N/A N/A 0.341±0.00 2.514±0.00 0.160±0.00 0.062±0.00 0.203±0.00 0.027±0.00 1.558±1.08 0.281±0.00 0.774±0.39 N/A 0.254±0.14
ENST00000562281 N/A N/A N/A 0.059±0.00 4.635±0.00 2.189±0.00 1.307±0.00 N/A 0.235±0.00 N/A N/A 4.825±0.00 2.183±0.00 0.305±0.00
ENST00000562889 1.577±0.00 N/A N/A 0.504±0.00 N/A 0.783±0.00 N/A N/A N/A N/A N/A N/A 1.473±0.00 0.318±0.00
ENST00000563808 N/A N/A N/A N/A 0.906±0.00 N/A 0.105±0.00 N/A 1.796±0.00 N/A 1.194±0.00 1.251±0.00 N/A 0.286±0.00
ENSG00000140545 ENST00000268150 55.510±0.00 53.326±0.00 1.475±0.00 4.650±3.28 12.762±9.48 78.761±77.06 30.315±25.16 10.031±0.00 2.462±0.67 34.144±32.42 32.559±27.22 67.051±36.25 75.513±26.48 75.277±57.89
ENST00000268151 N/A 43.532±0.00 N/A N/A 15.400±12.63 1.012±0.00 N/A N/A N/A 0.641±0.00 N/A 33.183±0.00 N/A N/A
ENST00000542878 61.896±0.00 67.479±0.00 N/A 11.549±0.00 46.871±0.00 1.390±0.00 48.300±0.00 15.374±0.00 2.818±0.00 N/A 54.553±0.00 22.877±20.48 50.218±0.00 18.393±0.00
ENST00000557944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558018 N/A N/A N/A 0.928±0.00 N/A N/A 2.276±0.00 N/A N/A N/A N/A 43.170±0.00 N/A N/A
ENST00000558029 N/A N/A N/A N/A N/A N/A N/A N/A 2.690±0.00 N/A N/A N/A N/A N/A
ENST00000558352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559770 N/A N/A 1.585±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560937 N/A N/A N/A N/A N/A N/A N/A N/A 3.952±0.00 N/A N/A N/A N/A N/A
ENST00000566497 44.096±0.00 N/A N/A 9.439±0.00 54.384±0.00 90.313±0.00 60.215±0.00 25.463±0.00 2.492±1.12 80.868±0.00 58.715±0.00 N/A 38.429±4.76 N/A
ENST00000613965 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.442±0.00 N/A N/A N/A N/A
ENST00000617199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 2.658±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030605 ENSMUST00000032825 29.312±1.09 N/A 17.371±0.39 N/A 54.144±1.91 9.108±1.25 N/A N/A 5.272±2.19 21.410±1.95 2.246±0.64 15.256±0.00 67.158±36.64 3.772±0.25
ENSMUST00000107409 170.244±47.12 214.282±4.92 58.745±1.86 50.611±11.02 261.320±108.12 72.559±6.78 61.357±8.87 76.307±1.98 20.072±13.98 170.555±10.91 17.932±2.55 204.465±59.21 122.005±43.90 27.127±11.18
ENSMUSG00000030606 ENSMUST00000032827 1.375±0.53 1.097±0.25 0.288±0.00 1.439±1.25 0.874±0.38 0.748±0.27 0.406±0.15 1.159±0.15 0.107±0.12 0.626±0.52 0.142±0.13 0.884±0.42 5.915±1.64 0.400±0.10

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