C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinaldehyde binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140522 RLBP1 9606 - 15:89209869-89221751 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268125 RLBP1-001 89209869-89221751 protein_coding
  ENST00000563254 RLBP1-005 89210002-89211843 protein_coding
  ENST00000564388 RLBP1-004 89219562-89221605 retained_intron
  ENST00000567787 RLBP1-002 89210750-89221614 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000268125ENST00000563254ENST00000564388ENST00000567787
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000268125 0.015±0.00 N/A 0.983±0.00 N/A 0.113±0.00 N/A N/A N/A 0.042±0.00 N/A 0.213±0.00
ENST00000563254 0.042±0.00 0.030±0.00 0.750±0.00 0.032±0.00 0.143±0.00 0.152±0.00 0.142±0.00 0.143±0.00 N/A 0.260±0.00 0.231±0.09
ENST00000564388 N/A 0.131±0.00 N/A N/A 0.166±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567787 N/A N/A 0.742±0.00 0.051±0.00 N/A N/A N/A N/A N/A N/A 0.160±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RB CIL_0002RB_0002 CGP 15:89087459-89221751
CIL_00011C CIL_00011C_0001 CGP 15:89209869-89317261

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005215 IEA transporter activity
GO:0005502 IEA 11-cis retinal binding
GO:0005575 ND cellular_component
GO:0005829 TAS cytosol
GO:0006776 TAS vitamin A metabolic process
GO:0006810 IEA transport
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0019841 IEA retinol binding
GO:0044297 IEA cell body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012504 rlbp1a retinaldehyde binding protein 1a protein_coding Danio_rerio
ENSDARG00000045808 rlbp1b retinaldehyde binding protein 1b protein_coding Danio_rerio
ENSMUSG00000039194 Rlbp1 retinaldehyde binding protein 1 protein_coding Mus_musculus

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