C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho GTPase activating protein 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140750 ARHGAP17 9606 - 16:24919385-25015666 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000289968 ARHGAP17-001 24919385-25015331 protein_coding
  ENST00000303665 ARHGAP17-002 24919393-25015331 protein_coding
  ENST00000455311 ARHGAP17-014 24959917-25015341 protein_coding
  ENST00000570320 ARHGAP17-003 24919393-24936827 retained_intron
  ENST00000570841 ARHGAP17-019 24943835-24954756 retained_intron
  ENST00000571406 ARHGAP17-006 24919414-24931023 protein_coding
  ENST00000571480 ARHGAP17-018 24964197-25015337 nonsense_mediated_decay
  ENST00000571575 ARHGAP17-015 24964284-24977456 retained_intron
  ENST00000571843 ARHGAP17-007 24919395-24931160 protein_coding
  ENST00000572314 ARHGAP17-008 24919892-24957536 retained_intron
  ENST00000573449 ARHGAP17-013 24968351-25015666 protein_coding
  ENST00000573625 ARHGAP17-016 24964245-25015300 nonsense_mediated_decay
  ENST00000573703 ARHGAP17-005 24919389-24921004 retained_intron
  ENST00000573765 ARHGAP17-023 24919398-24931400 protein_coding
  ENST00000575283 ARHGAP17-004 24919397-24939921 retained_intron
  ENST00000575412 ARHGAP17-022 24941696-24943842 retained_intron
  ENST00000575447 ARHGAP17-017 24968562-25015337 retained_intron
  ENST00000575656 ARHGAP17-020 24948982-24959981 retained_intron
  ENST00000575975 ARHGAP17-009 24954692-25015261 processed_transcript
  ENST00000576387 ARHGAP17-021 24949128-24954687 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000289968ENST00000303665ENST00000571480ENST00000571843ENST00000572314ENST00000573703ENST00000573765ENST00000575975
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000289968 15.414±0.00 8.330±0.00 2.885±0.00 9.267±0.00 7.760±0.00 N/A 8.354±0.00 2.034±0.00 4.908±0.00 1.670±0.00 5.968±3.38 11.280±0.70 11.109±1.48
ENST00000303665 5.918±0.00 10.281±0.00 3.534±0.00 4.913±3.66 2.541±0.71 7.446±0.00 N/A N/A 8.675±0.00 8.003±0.00 4.752±1.99 5.329±1.43 N/A
ENST00000571480 N/A N/A N/A N/A N/A 3.548±0.00 N/A 4.564±0.00 N/A N/A N/A N/A N/A
ENST00000571843 N/A N/A N/A N/A N/A N/A 7.709±0.00 1.562±0.00 N/A 3.843±0.00 5.493±0.00 8.231±0.09 N/A
ENST00000572314 N/A N/A N/A N/A N/A N/A 0.543±0.00 N/A N/A N/A N/A N/A N/A
ENST00000573703 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.589±0.00 N/A N/A N/A
ENST00000573765 N/A 17.074±0.00 N/A N/A N/A N/A N/A 2.567±0.00 11.521±0.00 4.702±0.00 6.122±0.00 N/A 11.122±0.00
ENST00000575975 N/A N/A N/A 7.822±0.00 5.826±0.00 N/A N/A N/A 4.714±0.00 N/A 11.459±0.00 28.447±0.00 19.303±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KU CIL_0005KU_0001 CGP 16:24845841-25015666
CIL_0003XC CIL_0003XC_0001 CGP 16:24919385-25178231

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005923 IEA tight junction
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0017124 IEA SH3 domain binding
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020488 arhgap17a Rho GTPase activating protein 17a protein_coding Danio_rerio
ENSDARG00000062263 ARHGAP17 (2 of 3) Rho GTPase activating protein 17 protein_coding Danio_rerio
ENSDARG00000070804 arhgap17b Rho GTPase activating protein 17b protein_coding Danio_rerio
ENSMUSG00000030766 Arhgap17 Rho GTPase activating protein 17 protein_coding Mus_musculus

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