C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003XC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140750-ENSG00000205629 CGP 9606 16:24919385-25178231
GeneTranscriptPositionBiotype
ENSG00000140750 (ARHGAP17)
Rho GTPase activating protein 17 		ENST00000289968 (ARHGAP17-001) 24919385-25015331 protein_coding
ENST00000303665 (ARHGAP17-002) 24919393-25015331 protein_coding
ENST00000455311 (ARHGAP17-014) 24959917-25015341 protein_coding
ENST00000570320 (ARHGAP17-003) 24919393-24936827 retained_intron
ENST00000570841 (ARHGAP17-019) 24943835-24954756 retained_intron
ENST00000571406 (ARHGAP17-006) 24919414-24931023 protein_coding
ENST00000571480 (ARHGAP17-018) 24964197-25015337 nonsense_mediated_decay
ENST00000571575 (ARHGAP17-015) 24964284-24977456 retained_intron
ENST00000571843 (ARHGAP17-007) 24919395-24931160 protein_coding
ENST00000572314 (ARHGAP17-008) 24919892-24957536 retained_intron
ENST00000573449 (ARHGAP17-013) 24968351-25015666 protein_coding
ENST00000573625 (ARHGAP17-016) 24964245-25015300 nonsense_mediated_decay
ENST00000573703 (ARHGAP17-005) 24919389-24921004 retained_intron
ENST00000573765 (ARHGAP17-023) 24919398-24931400 protein_coding
ENST00000575283 (ARHGAP17-004) 24919397-24939921 retained_intron
ENST00000575412 (ARHGAP17-022) 24941696-24943842 retained_intron
ENST00000575447 (ARHGAP17-017) 24968562-25015337 retained_intron
ENST00000575656 (ARHGAP17-020) 24948982-24959981 retained_intron
ENST00000575975 (ARHGAP17-009) 24954692-25015261 processed_transcript
ENST00000576387 (ARHGAP17-021) 24949128-24954687 processed_transcript
ENSG00000205629 (LCMT1)
leucine carboxyl methyltransferase 1 		ENST00000380962 (LCMT1-003) 25111731-25178231 nonsense_mediated_decay
ENST00000380966 (LCMT1-011) 25111735-25178023 protein_coding
ENST00000399069 (LCMT1-001) 25111729-25178231 protein_coding
ENST00000564011 (LCMT1-002) 25111735-25178198 nonsense_mediated_decay
ENST00000570981 (LCMT1-004) 25111932-25140503 protein_coding
ENST00000572761 (LCMT1-007) 25164598-25169545 protein_coding
ENST00000572869 (LCMT1-012) 25151531-25178045 processed_transcript
ENST00000573435 (LCMT1-013) 25151525-25161206 processed_transcript
ENST00000574450 (LCMT1-008) 25174746-25178228 retained_intron
ENST00000575396 (LCMT1-009) 25164690-25178226 protein_coding
ENST00000576382 (LCMT1-005) 25140055-25161168 retained_intron
ENST00000576625 (LCMT1-010) 25140176-25178082 nonsense_mediated_decay
ENST00000577157 (LCMT1-006) 25111745-25158931 processed_transcript
ENSG00000260034 (LCMT1-AS2)
LCMT1 antisense RNA 2 		ENST00000562280 (LCMT1-AS2-001) 25140577-25149032 antisense
ENST00000565214 (LCMT1-AS2-002) 25140583-25146248 antisense
ENSG00000260448 (LCMT1-AS1)
LCMT1 antisense RNA 1 		ENST00000563176 (LCMT1-AS1-003) 25100564-25111414 lincRNA
ENST00000563962 (LCMT1-AS1-001) 25086333-25111479 lincRNA
ENST00000566507 (LCMT1-AS1-004) 25085592-25103558 lincRNA
ENST00000569920 (LCMT1-AS1-002) 25103328-25111555 lincRNA
ENSG00000260714 (RP11-266L9.1)
 ENST00000569988 (RP11-266L9.1-001) 25015978-25021023 processed_pseudogene
ENSG00000262155 (RP11-266L9.5)
 ENST00000571219 (RP11-266L9.5-001) 25066937-25068943 lincRNA
ENSG00000262587 (RP11-266L9.4)
 ENST00000575694 (RP11-266L9.4-001) 25031881-25058109 transcribed_unprocessed_pseudogene
ENST00000619106 (RP11-266L9.4-002) 25031744-25032775 processed_transcript
ENSG00000262700 (RP11-266L9.3)
 ENST00000572236 (RP11-266L9.3-001) 25093387-25095255 processed_pseudogene
ENSG00000263326 (RP11-266L9.6)
 ENST00000576103 (RP11-266L9.6-001) 25071490-25072727 unprocessed_pseudogene
ENSG00000271105 (SCML2P2)
sex comb on midleg-like 2 (Drosophila) pseudogene 2 		ENST00000604266 (SCML2P2-001) 25069570-25070109 processed_pseudogene
ENSG00000275494 (RP11-266L9.8)
 ENST00000613406 (RP11-266L9.8-001) 25106569-25107102 sense_intronic
CIL_0003XC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030766-ENSMUSG00000030763 CGP 10090 7:123279150-123430358
GeneTranscriptPositionBiotype
ENSMUSG00000030763 (Lcmt1)
leucine carboxyl methyltransferase 1 		ENSMUST00000033025 (Lcmt1-201) 123377982-123430358 protein_coding
ENSMUSG00000030766 (Arhgap17)
Rho GTPase activating protein 17 		ENSMUST00000098060 (Arhgap17-201) 123279150-123369915 protein_coding
ENSMUST00000106442 (Arhgap17-202) 123279150-123369915 protein_coding
ENSMUST00000167309 (Arhgap17-203) 123279150-123369915 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XC_0001ENSG00000140750ENST00000289968ENST00000303665ENST00000571480ENST00000571843ENST00000572314ENST00000573703ENST00000573765ENST00000575975ENSG00000205629ENST00000380962ENST00000380966ENST00000399069ENST00000570981ENST00000572869ENST00000573435ENST00000575396ENST00000576625ENST00000577157ENSG00000260034ENST00000562280ENST00000565214ENSG00000260448ENST00000563176ENST00000563962ENST00000566507ENST00000569920ENSG00000260714ENST00000569988ENSG00000262155ENST00000571219ENSG00000262587ENST00000575694ENST00000619106ENSG00000262700ENST00000572236ENSG00000263326ENST00000576103ENSG00000271105ENST00000604266ENSG00000275494ENST00000613406CIL_0003XC_0002ENSMUSG00000030763ENSMUST00000033025ENSMUSG00000030766ENSMUST00000098060ENSMUST00000106442ENSMUST00000167309
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140750 ENST00000289968 15.414±0.00 8.330±0.00 N/A 2.885±0.00 9.267±0.00 7.760±0.00 N/A 8.354±0.00 2.034±0.00 4.908±0.00 1.670±0.00 5.968±3.38 11.280±0.70 11.109±1.48
ENST00000303665 5.918±0.00 10.281±0.00 N/A 3.534±0.00 4.913±3.66 2.541±0.71 7.446±0.00 N/A N/A 8.675±0.00 8.003±0.00 4.752±1.99 5.329±1.43 N/A
ENST00000455311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571480 N/A N/A N/A N/A N/A N/A 3.548±0.00 N/A 4.564±0.00 N/A N/A N/A N/A N/A
ENST00000571575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571843 N/A N/A N/A N/A N/A N/A N/A 7.709±0.00 1.562±0.00 N/A 3.843±0.00 5.493±0.00 8.231±0.09 N/A
ENST00000572314 N/A N/A N/A N/A N/A N/A N/A 0.543±0.00 N/A N/A N/A N/A N/A N/A
ENST00000573449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.589±0.00 N/A N/A N/A
ENST00000573765 N/A 17.074±0.00 N/A N/A N/A N/A N/A N/A 2.567±0.00 11.521±0.00 4.702±0.00 6.122±0.00 N/A 11.122±0.00
ENST00000575283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575975 N/A N/A N/A N/A 7.822±0.00 5.826±0.00 N/A N/A N/A 4.714±0.00 N/A 11.459±0.00 28.447±0.00 19.303±0.00
ENST00000576387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000205629 ENST00000380962 N/A 2.586±0.00 N/A N/A 2.056±0.00 N/A N/A N/A 0.537±0.00 N/A N/A N/A 6.480±2.42 N/A
ENST00000380966 N/A N/A N/A N/A 1.716±0.00 N/A 0.753±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000399069 8.071±0.00 2.147±0.00 N/A 15.491±9.01 6.685±0.00 5.437±4.29 3.594±3.33 6.534±6.46 1.390±0.88 5.065±0.00 16.643±0.00 11.640±9.56 17.336±4.78 21.045±4.57
ENST00000564011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570981 N/A N/A 0.503±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.671±0.00 N/A N/A
ENST00000572761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572869 4.352±0.00 5.578±0.00 0.669±0.00 N/A N/A 7.763±0.00 N/A N/A N/A N/A N/A N/A N/A 13.626±0.00
ENST00000573435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.600±0.00 101.502±0.00 103.835±0.00
ENST00000574450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575396 N/A N/A N/A N/A N/A N/A N/A 16.278±0.00 4.876±0.00 6.638±0.00 N/A N/A N/A N/A
ENST00000576382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576625 N/A N/A 0.779±0.00 3.972±0.00 4.532±0.00 4.089±0.00 1.075±0.00 0.617±0.00 3.081±0.00 N/A 6.042±1.78 6.333±1.48 15.535±0.00 24.760±0.00
ENST00000577157 N/A N/A N/A N/A N/A 4.656±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260034 ENST00000562280 0.058±0.00 0.139±0.00 N/A 0.140±0.00 N/A 0.228±0.22 0.057±0.02 0.080±0.00 0.247±0.00 N/A 0.042±0.00 N/A 11.916±1.75 0.068±0.04
ENST00000565214 0.033±0.00 0.136±0.00 0.247±0.00 0.173±0.06 0.519±0.42 0.320±0.30 0.064±0.03 0.095±0.03 0.307±0.30 0.727±0.00 0.176±0.17 0.071±0.08 3.119±0.85 0.039±0.02
ENSG00000260448 ENST00000563176 N/A N/A 1.914±0.00 0.402±0.00 N/A N/A 0.284±0.00 N/A N/A N/A N/A N/A N/A 0.651±0.00
ENST00000563962 0.260±0.00 0.655±0.00 N/A 0.360±0.00 0.140±0.00 0.174±0.00 0.390±0.00 0.463±0.00 0.121±0.00 0.413±0.00 0.381±0.00 0.169±0.09 N/A 0.213±0.00
ENST00000566507 N/A 0.503±0.00 N/A 0.884±0.00 N/A N/A 0.376±0.00 N/A N/A 3.767±0.00 0.674±0.00 0.259±0.00 0.180±0.09 N/A
ENST00000569920 0.147±0.00 0.269±0.00 N/A 0.366±0.00 N/A N/A 1.236±0.00 0.250±0.00 0.730±0.70 N/A N/A 0.196±0.02 0.363±0.08 1.198±0.55
ENSG00000260714 ENST00000569988 0.015±0.00 0.110±0.00 N/A 0.050±0.01 0.032±0.00 0.038±0.00 0.009±0.01 0.040±0.00 N/A 0.036±0.00 0.005±0.00 0.017±0.01 0.025±0.00 0.171±0.00
ENSG00000262155 ENST00000571219 0.095±0.00 0.302±0.00 1.321±0.00 N/A 0.125±0.02 0.316±0.15 0.263±0.04 0.040±0.00 0.322±0.00 0.462±0.34 0.461±0.20 0.221±0.13 0.125±0.07 2.116±0.63
ENSG00000262587 ENST00000575694 N/A N/A N/A 0.687±0.00 N/A 0.186±0.02 0.305±0.00 0.128±0.00 N/A 0.389±0.02 N/A 0.311±0.07 0.748±0.50 1.207±0.00
ENST00000619106 0.435±0.00 2.282±0.00 N/A 0.550±0.14 0.790±0.00 0.308±0.00 0.412±0.00 0.437±0.00 0.155±0.00 0.062±0.00 0.269±0.00 0.682±0.45 0.779±0.23 0.767±0.62
ENSG00000262700 ENST00000572236 N/A N/A N/A 0.076±0.00 0.069±0.00 0.024±0.00 N/A N/A N/A 0.028±0.00 N/A 0.092±0.00 0.035±0.00 0.128±0.00
ENSG00000263326 ENST00000576103 N/A 0.096±0.00 N/A 0.793±0.00 0.113±0.00 N/A 0.474±0.00 0.267±0.00 0.154±0.00 0.462±0.39 0.135±0.00 0.091±0.00 0.164±0.02 0.187±0.00
ENSG00000271105 ENST00000604266 N/A 0.243±0.00 4.268±0.00 1.211±0.80 0.622±0.60 0.163±0.05 0.965±0.70 0.428±0.00 1.497±0.00 0.513±0.00 0.436±0.00 0.270±0.19 0.206±0.00 0.549±0.27
ENSG00000275494 ENST00000613406 1.728±0.00 3.037±0.00 N/A 2.138±0.00 3.459±0.00 1.206±0.00 1.185±1.07 3.840±0.00 1.364±0.62 1.313±0.00 5.998±1.10 2.167±0.38 1.031±0.01 16.161±4.80
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030763 ENSMUST00000033025 17.732±5.75 13.093±4.73 14.286±1.39 21.060±5.15 8.860±3.36 12.073±0.79 8.692±0.90 15.296±1.61 9.600±5.11 10.135±1.87 14.013±0.55 14.201±5.42 14.401±6.61 7.882±3.33
ENSMUSG00000030766 ENSMUST00000098060 N/A 4.017±0.34 2.071±0.86 N/A N/A N/A 0.577±0.00 2.120±0.26 1.653±0.57 2.685±0.00 0.734±0.10 3.484±1.61 5.422±3.38 0.465±0.00
ENSMUST00000106442 4.674±2.49 8.924±3.21 1.677±0.52 5.365±1.24 5.262±2.65 10.492±2.86 1.486±0.22 3.713±0.96 1.987±0.91 3.698±1.80 N/A 8.945±3.64 10.094±4.23 1.507±0.25
ENSMUST00000167309 2.122±0.05 3.272±0.83 2.488±0.03 0.741±0.00 3.079±0.77 N/A 0.392±0.00 0.938±0.07 2.042±0.89 1.874±0.08 1.397±0.37 2.625±0.06 3.000±1.24 1.080±0.24

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