C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: src kinase associated phosphoprotein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141293 SKAP1 9606 - 17:48133440-48430275 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336915 SKAP1-001 48133440-48430190 protein_coding
  ENST00000579336 SKAP1-005 48180092-48185179 protein_coding
  ENST00000579476 SKAP1-007 48133446-48162670 retained_intron
  ENST00000581400 SKAP1-006 48137229-48346005 nonsense_mediated_decay
  ENST00000581419 SKAP1-004 48180108-48345965 nonsense_mediated_decay
  ENST00000583844 SKAP1-008 48133446-48137334 nonsense_mediated_decay
  ENST00000584709 SKAP1-003 48133445-48430275 nonsense_mediated_decay
  ENST00000584924 SKAP1-002 48136938-48430219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336915ENST00000579336ENST00000579476ENST00000581400ENST00000581419ENST00000583844ENST00000584709ENST00000584924
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336915 0.167±0.00 4.301±0.00 N/A 0.056±0.00 1.021±0.00 N/A 0.045±0.00 N/A N/A 2.585±2.00 N/A 1.633±0.97 0.612±0.31 8.980±2.48
ENST00000579336 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A 0.757±0.00 N/A N/A
ENST00000579476 N/A N/A N/A N/A N/A 0.384±0.00 0.078±0.03 4.022±0.00 3.076±0.00 N/A N/A 0.707±0.00 0.482±0.04 N/A
ENST00000581400 N/A 2.283±0.00 N/A N/A 0.460±0.02 0.636±0.00 0.074±0.00 N/A N/A N/A N/A 2.129±0.00 0.744±0.00 6.956±0.00
ENST00000581419 N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A 0.174±0.00 N/A N/A N/A
ENST00000583844 N/A 3.812±0.00 N/A 0.113±0.00 N/A 0.707±0.00 0.053±0.00 N/A N/A N/A 0.283±0.00 N/A N/A N/A
ENST00000584709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A
ENST00000584924 N/A N/A 0.302±0.00 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A 0.497±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005070 IC SH3/SH2 adaptor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0009967 IC positive regulation of signal transduction
GO:0017124 TAS SH3 domain binding
GO:0019901 IPI protein kinase binding
GO:0019903 IPI protein phosphatase binding
GO:0032403 IEA protein complex binding
GO:0042169 IDA SH2 domain binding
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050852 IMP T cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001498 skap1 src kinase associated phosphoprotein 1 protein_coding Danio_rerio
ENSMUSG00000057058 Skap1 src family associated phosphoprotein 1 protein_coding Mus_musculus

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