C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox homolog 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141570 CBX8 9606 - 17:79792132-79801683 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269385 CBX8-001 79792132-79797116 protein_coding
  ENST00000413392 CBX8-002 79795049-79798331 protein_coding
  ENST00000427800 CBX8-004 79795204-79801533 protein_coding
  ENST00000485449 CBX8-003 79795394-79801683 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269385ENST00000413392ENST00000427800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269385 0.285±0.00 0.363±0.00 0.070±0.00 0.472±0.32 0.340±0.03 0.255±0.01 0.256±0.00 1.307±0.00 0.198±0.00 0.222±0.18 0.110±0.00 1.013±0.47 0.911±0.10 1.765±0.15
ENST00000413392 0.793±0.00 0.642±0.00 N/A N/A 1.198±0.00 1.101±0.00 N/A 4.397±0.00 0.770±0.00 N/A 0.515±0.00 1.419±0.64 1.935±1.07 4.132±2.66
ENST00000427800 N/A 0.484±0.00 N/A N/A 1.494±0.00 0.266±0.00 0.562±0.36 N/A N/A N/A 0.367±0.00 2.063±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002X9 CIL_0002X9_0001 CGP 17:79778132-79801683
CIL_0002WM CIL_0002WM_0001 CGP 17:79792132-79839429

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IEA ubiquitin ligase complex
GO:0000790 IDA nuclear chromatin
GO:0000792 IEA heterochromatin
GO:0003727 IEA single-stranded RNA binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016574 IEA histone ubiquitination
GO:0031519 IDA PcG protein complex
GO:0035064 IDA methylated histone binding
GO:0035102 IDA PRC1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070329 cbx8b chromobox homolog 8b protein_coding Danio_rerio
ENSDARG00000087327 cbx8a chromobox homolog 8a (Pc class homolog, Drosophila) protein_coding Danio_rerio
ENSDARG00000092933 cbx8a chromobox homolog 8a (Pc class homolog, Drosophila) protein_coding Danio_rerio
ENSMUSG00000025578 Cbx8 chromobox 8 protein_coding Mus_musculus

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