C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269385 CBX8-001 ENSG00000141570 9606 - 17:79792132-79797116 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269385
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269385 0.285±0.00 0.363±0.00 0.070±0.00 0.472±0.32 0.340±0.03 0.255±0.01 0.256±0.00 1.307±0.00 0.198±0.00 0.222±0.18 0.110±0.00 1.013±0.47 0.911±0.10 1.765±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002X9 CIL_0002X9_0001 CGP 17:79778132-79801683
CIL_0002WM CIL_0002WM_0001 CGP 17:79792132-79839429

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IEA ubiquitin ligase complex
GO:0000790 IDA nuclear chromatin
GO:0000792 IEA heterochromatin
GO:0003727 IEA single-stranded RNA binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016574 IEA histone ubiquitination
GO:0031519 IDA PcG protein complex
GO:0035064 IDA methylated histone binding
GO:0035102 IDA PRC1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026663 Cbx8-001 protein_coding Mus_musculus 0 1158
ENSMUST00000128019 Cbx8-002 processed_transcript Mus_musculus 0 279
ENSMUST00000143831 Cbx8-003 processed_transcript Mus_musculus 0 252

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