C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: secreted and transmembrane 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141574 SECTM1 9606 - 17:82321024-82334074 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269389 SECTM1-001 82321024-82333998 protein_coding
  ENST00000580437 SECTM1-006 82321887-82333762 protein_coding
  ENST00000581691 SECTM1-002 82322879-82334074 protein_coding
  ENST00000581864 SECTM1-007 82322115-82333748 nonsense_mediated_decay
  ENST00000581954 SECTM1-008 82324853-82328506 protein_coding
  ENST00000582290 SECTM1-004 82324729-82333766 protein_coding
  ENST00000582563 SECTM1-003 82322965-82333769 protein_coding
  ENST00000583093 SECTM1-005 82323280-82333763 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269389ENST00000580437ENST00000581691ENST00000581864ENST00000583093
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269389 3.310±0.00 2.216±0.00 0.651±0.00 2.423±0.59 N/A 0.081±0.00 0.497±0.00 0.738±0.32 2.501±0.00 0.714±0.00 2.909±2.25 5.495±2.81 0.383±0.19
ENST00000580437 4.784±0.00 6.046±0.00 0.387±0.10 4.858±0.00 4.543±0.00 0.815±0.00 1.341±0.00 0.411±0.00 N/A 0.787±0.00 3.982±0.88 2.770±1.31 2.483±0.00
ENST00000581691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.529±0.00
ENST00000581864 6.309±0.00 10.345±0.00 0.498±0.00 N/A 4.378±2.52 N/A N/A 0.557±0.05 N/A 1.196±0.00 5.931±4.34 2.726±0.00 0.978±0.67
ENST00000583093 N/A N/A N/A N/A N/A N/A N/A 0.992±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054O CIL_00054O_0001 CGP 17:82314868-82334074
CIL_00054P CIL_00054P_0001 CGP 17:82321024-82363776

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 IMP signal transducer activity
GO:0005125 TAS cytokine activity
GO:0005615 TAS extracellular space
GO:0005794 TAS Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006955 TAS immune response
GO:0007165 IMP signal transduction
GO:0007498 TAS mesoderm development
GO:0016021 IEA integral component of membrane
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000025165 Sectm1a secreted and transmembrane 1A protein_coding Mus_musculus
ENSMUSG00000039364 Sectm1b secreted and transmembrane 1B protein_coding Mus_musculus

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