C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox homolog 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141582 CBX4 9606 - 17:79833156-79839429 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269397 CBX4-001 79833156-79839429 protein_coding
  ENST00000448310 CBX4-002 79835044-79839387 protein_coding
  ENST00000494546 CBX4-003 79837746-79839413 retained_intron
  ENST00000495122 CBX4-004 79835143-79837881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269397ENST00000448310ENST00000495122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269397 3.618±0.00 6.364±0.00 1.262±0.00 8.151±5.90 3.500±0.92 4.079±0.00 4.500±0.00 7.111±0.00 2.771±0.00 5.681±4.57 1.433±0.00 12.029±6.81 47.431±41.71 7.028±3.33
ENST00000448310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.865±0.00 N/A N/A N/A
ENST00000495122 N/A N/A N/A N/A N/A N/A N/A N/A 1.819±0.00 3.207±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WM CIL_0002WM_0001 CGP 17:79792132-79839429
CIL_0005AW CIL_0005AW_0001 CGP 17:79833156-80035848

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0003682 IEA chromatin binding
GO:0003714 TAS transcription corepressor activity
GO:0003727 IEA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0016604 IEA nuclear body
GO:0016874 IEA ligase activity
GO:0016925 IEA protein sumoylation
GO:0019899 IPI enzyme binding
GO:0031519 IDA PcG protein complex
GO:0032183 IDA SUMO binding
GO:0035064 IEA methylated histone binding
GO:0035102 IDA PRC1 complex
GO:0043066 TAS negative regulation of apoptotic process
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0051219 IEA phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070807 cbx4 chromobox homolog 4 (Pc class homolog, Drosophila) protein_coding Danio_rerio
ENSMUSG00000039989 Cbx4 chromobox 4 protein_coding Mus_musculus

Loading