C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005AW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141582-ENSG00000167291 CGP 9606 17:79833156-80035848
GeneTranscriptPositionBiotype
ENSG00000141582 (CBX4)
chromobox homolog 4 		ENST00000269397 (CBX4-001) 79833156-79839429 protein_coding
ENST00000448310 (CBX4-002) 79835044-79839387 protein_coding
ENST00000494546 (CBX4-003) 79837746-79839413 retained_intron
ENST00000495122 (CBX4-004) 79835143-79837881 protein_coding
ENSG00000167291 (TBC1D16)
TBC1 domain family, member 16 		ENST00000310924 (TBC1D16-001) 79932343-80035848 protein_coding
ENST00000340848 (TBC1D16-003) 79937908-79950836 protein_coding
ENST00000570373 (TBC1D16-008) 79944045-79950834 protein_coding
ENST00000571872 (TBC1D16-005) 79950571-79993634 protein_coding
ENST00000572862 (TBC1D16-004) 79943856-79950828 protein_coding
ENST00000573782 (TBC1D16-006) 79947648-79950830 protein_coding
ENST00000574241 (TBC1D16-009) 79947645-79952013 protein_coding
ENST00000574427 (TBC1D16-007) 79947695-79950833 protein_coding
ENST00000576768 (TBC1D16-002) 79935792-79950857 protein_coding
ENSG00000261978 (CTD-2529O21.2)
 ENST00000570952 (CTD-2529O21.2-002) 80023931-80026107 antisense
ENST00000575404 (CTD-2529O21.2-001) 80023894-80026107 antisense
ENSG00000262172 (CTD-2529O21.1)
 ENST00000576632 (CTD-2529O21.1-001) 79991944-79992841 sense_intronic
ENSG00000262188 (RP11-353N14.4)
 ENST00000572353 (RP11-353N14.4-002) 79919374-79925462 lincRNA
ENST00000574526 (RP11-353N14.4-001) 79919357-79924010 lincRNA
ENSG00000262585 (RP11-353N14.5)
 ENST00000576738 (RP11-353N14.5-001) 79915252-79926725 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005AW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039989-ENSMUSG00000039976 CGP 10090 11:119077573-119228499
GeneTranscriptPositionBiotype
ENSMUSG00000039976 (Tbc1d16)
TBC1 domain family, member 16 		ENSMUST00000036113 (Tbc1d16-001) 119143045-119228499 protein_coding
ENSMUST00000125856 (Tbc1d16-002) 119210641-119221976 protein_coding
ENSMUSG00000039989 (Cbx4)
chromobox 4 		ENSMUST00000026665 (Cbx4-001) 119077573-119086221 protein_coding
ENSMUST00000145058 (Cbx4-002) 119081373-119086221 processed_transcript
ENSMUSG00000085548 (Gm11753)
predicted gene 11753 		ENSMUST00000151091 (Gm11753-001) 119183953-119184516 sense_intronic
ENSMUSG00000086306 (Gm11754)
predicted gene 11754 		ENSMUST00000156576 (Gm11754-001) 119106328-119111425 lincRNA
ENSMUSG00000086547 (Gm11755)
predicted gene 11755 		ENSMUST00000144096 (Gm11755-001) 119123011-119138421 lincRNA
ENSMUSG00000087404 (Gm11752)
predicted gene 11752 		ENSMUST00000143291 (Gm11752-001) 119220160-119222473 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005AW_0001ENSG00000141582ENST00000269397ENST00000448310ENST00000494546ENST00000495122ENSG00000167291ENST00000310924ENST00000340848ENST00000570373ENST00000571872ENST00000572862ENST00000573782ENST00000574241ENST00000574427ENST00000576768ENSG00000261978ENST00000570952ENST00000575404ENSG00000262172ENST00000576632ENSG00000262188ENST00000572353ENST00000574526ENSG00000262585ENST00000576738CIL_0005AW_0002ENSMUSG00000039976ENSMUST00000036113ENSMUST00000125856ENSMUSG00000039989ENSMUST00000026665ENSMUST00000145058ENSMUSG00000085548ENSMUST00000151091ENSMUSG00000086306ENSMUST00000156576ENSMUSG00000086547ENSMUST00000144096ENSMUSG00000087404ENSMUST00000143291
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005AW_0001ENSG00000141582ENST00000269397ENST00000448310ENST00000495122ENSG00000167291ENST00000310924ENST00000340848ENST00000574427ENST00000576768ENSG00000261978ENST00000570952ENST00000575404ENSG00000262172ENST00000576632ENSG00000262188ENST00000572353ENST00000574526ENSG00000262585ENST00000576738CIL_0005AW_0002ENSMUSG00000039976ENSMUST00000036113ENSMUSG00000039989ENSMUST00000026665ENSMUST00000145058ENSMUSG00000085548ENSMUST00000151091ENSMUSG00000086306ENSMUST00000156576ENSMUSG00000086547ENSMUST00000144096ENSMUSG00000087404ENSMUST00000143291
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141582 ENST00000269397 3.618±0.00 6.364±0.00 1.262±0.00 8.151±5.90 3.500±0.92 4.079±0.00 4.500±0.00 7.111±0.00 2.771±0.00 5.681±4.57 1.433±0.00 12.029±6.81 47.431±41.71 7.028±3.33
ENST00000448310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.865±0.00 N/A N/A N/A
ENST00000494546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495122 N/A N/A N/A N/A N/A N/A N/A N/A 1.819±0.00 3.207±0.00 N/A N/A N/A N/A
ENSG00000167291 ENST00000310924 5.033±0.00 3.092±0.00 1.008±0.00 0.650±0.29 6.399±5.13 1.440±0.76 1.503±0.00 3.815±0.00 2.130±1.52 1.361±0.00 0.403±0.00 3.017±2.26 0.767±0.45 1.082±0.75
ENST00000340848 N/A N/A 1.115±0.00 1.254±0.00 1.234±0.00 N/A 0.273±0.00 0.223±0.00 0.581±0.00 0.619±0.00 N/A 1.651±0.00 0.771±0.00 N/A
ENST00000570373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574427 N/A N/A N/A N/A N/A N/A N/A N/A 2.838±0.00 N/A N/A N/A N/A N/A
ENST00000576768 10.234±0.00 3.583±0.00 0.948±0.00 1.304±0.64 14.597±0.00 3.599±0.00 1.056±0.87 4.624±0.00 2.097±1.22 1.243±0.92 0.634±0.26 3.025±1.56 1.650±1.18 1.488±0.00
ENSG00000261978 ENST00000570952 N/A 0.774±0.00 N/A N/A 0.058±0.00 2.679±0.00 N/A 0.460±0.00 1.419±0.00 N/A 0.242±0.00 N/A N/A 0.151±0.00
ENST00000575404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A
ENSG00000262172 ENST00000576632 0.083±0.00 0.091±0.00 0.466±0.00 N/A N/A N/A N/A 0.655±0.00 N/A N/A N/A 0.342±0.00 N/A 0.591±0.23
ENSG00000262188 ENST00000572353 N/A N/A N/A 0.641±0.36 N/A N/A N/A N/A 0.050±0.00 0.284±0.00 N/A 0.446±0.00 N/A N/A
ENST00000574526 0.302±0.00 0.291±0.00 N/A 0.258±0.17 0.128±0.00 0.166±0.00 0.234±0.00 0.330±0.04 0.021±0.00 0.138±0.00 0.112±0.00 0.151±0.03 0.093±0.00 0.600±0.10
ENSG00000262585 ENST00000576738 0.020±0.00 0.034±0.00 N/A 0.030±0.00 0.022±0.00 0.047±0.00 N/A 0.035±0.00 0.010±0.00 N/A N/A 0.073±0.04 0.013±0.00 0.061±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039976 ENSMUST00000036113 5.802±1.85 3.660±1.05 7.501±0.96 22.603±13.12 5.051±1.30 5.031±1.35 11.719±1.67 9.508±3.17 2.421±1.40 7.181±0.35 7.024±1.38 8.742±1.98 4.032±2.24 0.434±0.17
ENSMUST00000125856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039989 ENSMUST00000026665 6.780±0.51 61.620±4.20 5.699±2.44 4.185±1.17 17.037±7.77 4.547±0.71 1.868±0.65 3.703±1.33 2.085±1.49 8.793±1.23 0.419±0.08 10.711±4.36 5.503±1.57 0.701±0.28
ENSMUST00000145058 N/A N/A 6.478±0.00 74.425±0.00 N/A N/A 1.276±0.00 N/A N/A N/A 0.303±0.08 27.568±37.98 49.755±68.54 5.365±4.51
ENSMUSG00000085548 ENSMUST00000151091 0.148±0.02 N/A 0.035±0.00 0.060±0.00 N/A N/A N/A 0.130±0.01 0.211±0.06 N/A N/A 0.236±0.00 0.197±0.15 9.928±3.95
ENSMUSG00000086306 ENSMUST00000156576 0.058±0.00 N/A N/A 0.180±0.00 N/A N/A N/A 0.656±0.00 0.065±0.00 N/A N/A 0.084±0.00 1.408±0.95 0.078±0.02
ENSMUSG00000086547 ENSMUST00000144096 N/A 0.109±0.04 0.077±0.06 0.029±0.00 0.055±0.00 N/A N/A N/A 0.014±0.00 0.045±0.00 N/A 0.047±0.01 0.102±0.07 0.058±0.02
ENSMUSG00000087404 ENSMUST00000143291 0.111±0.00 N/A 0.022±0.00 N/A 0.089±0.00 0.510±0.20 1.040±0.40 2.236±0.43 0.638±0.43 N/A 3.122±0.78 0.405±0.27 N/A N/A

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