C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269397 CBX4-001 ENSG00000141582 9606 - 17:79833156-79839429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269397
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269397 3.618±0.00 6.364±0.00 1.262±0.00 8.151±5.90 3.500±0.92 4.079±0.00 4.500±0.00 7.111±0.00 2.771±0.00 5.681±4.57 1.433±0.00 12.029±6.81 47.431±41.71 7.028±3.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WM CIL_0002WM_0001 CGP 17:79792132-79839429
CIL_0005AW CIL_0005AW_0001 CGP 17:79833156-80035848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0003682 IEA chromatin binding
GO:0003714 TAS transcription corepressor activity
GO:0003727 IEA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0016604 IEA nuclear body
GO:0016874 IEA ligase activity
GO:0016925 IEA protein sumoylation
GO:0019899 IPI enzyme binding
GO:0031519 IDA PcG protein complex
GO:0032183 IDA SUMO binding
GO:0035064 IEA methylated histone binding
GO:0035102 IDA PRC1 complex
GO:0043066 TAS negative regulation of apoptotic process
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0051219 IEA phosphoprotein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026665 Cbx4-001 protein_coding Mus_musculus 0 1831
ENSMUST00000145058 Cbx4-002 processed_transcript Mus_musculus 0 1256

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