C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor-like 5C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141748 ARL5C 9606 - 17:39156894-39167484 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269586 ARL5C-001 39156894-39165760 protein_coding
  ENST00000578912 ARL5C-005 39160198-39162734 nonsense_mediated_decay
  ENST00000581255 ARL5C-004 39164975-39166161 retained_intron
  ENST00000581554 ARL5C-003 39165073-39167484 retained_intron
  ENST00000583123 ARL5C-002 39164079-39167065 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000269586ENST00000578912ENST00000581255ENST00000583123
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000269586 0.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 0.098±0.00 N/A
ENST00000578912 0.082±0.00 0.260±0.00 N/A 0.292±0.00 0.323±0.00 0.033±0.00 0.228±0.00 N/A N/A N/A 0.136±0.00 0.105±0.00
ENST00000581255 N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583123 N/A 0.464±0.00 N/A 0.366±0.00 0.096±0.00 0.187±0.00 0.242±0.00 0.030±0.00 0.059±0.00 N/A N/A 0.061±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QJ CIL_0006QJ_0001 CGP 17:39063303-39167484
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_0000TK CIL_0000TK_0002 CGP 17:39156894-39197703

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006886 IEA intracellular protein transport
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035719 arl5c ADP-ribosylation factor-like 5C protein_coding Danio_rerio
ENSMUSG00000038352 Arl5c ADP-ribosylation factor-like 5C protein_coding Mus_musculus

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