C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PR domain containing 15
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141956 PRDM15 9606 - 21:41798225-41879482 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269844 PRDM15-201 41800994-41879482 protein_coding
  ENST00000398548 PRDM15-018 41798225-41879473 protein_coding
  ENST00000422911 PRDM15-010 41798225-41879473 protein_coding
  ENST00000433067 PRDM15-001 41798225-41879482 nonsense_mediated_decay
  ENST00000441787 PRDM15-015 41798225-41879473 nonsense_mediated_decay
  ENST00000447016 PRDM15-002 41798225-41863302 nonsense_mediated_decay
  ENST00000447207 PRDM15-202 41798227-41860378 protein_coding
  ENST00000449395 PRDM15-016 41798225-41879473 nonsense_mediated_decay
  ENST00000465955 PRDM15-014 41801628-41803118 processed_transcript
  ENST00000470586 PRDM15-004 41798225-41810466 processed_transcript
  ENST00000477633 PRDM15-013 41801657-41804723 processed_transcript
  ENST00000486812 PRDM15-003 41798225-41814962 retained_intron
  ENST00000489661 PRDM15-009 41825977-41836894 retained_intron
  ENST00000491486 PRDM15-011 41821191-41835518 processed_transcript
  ENST00000495217 PRDM15-012 41802894-41819783 processed_transcript
  ENST00000496124 PRDM15-008 41828321-41836932 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398548ENST00000422911ENST00000441787ENST00000447207ENST00000449395ENST00000465955ENST00000470586ENST00000477633ENST00000486812ENST00000495217
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398548 0.251±0.00 0.495±0.00 N/A 0.548±0.00 0.407±0.00 N/A N/A N/A N/A 0.292±0.00 N/A 0.896±0.54 0.247±0.18 N/A
ENST00000422911 0.399±0.00 N/A N/A N/A N/A N/A N/A N/A 0.308±0.00 N/A N/A 0.389±0.00 0.291±0.00 0.588±0.00
ENST00000441787 N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A 0.538±0.50 N/A N/A N/A
ENST00000447207 N/A N/A 0.105±0.00 0.271±0.00 0.521±0.00 N/A N/A N/A N/A 0.338±0.20 N/A 0.252±0.08 0.265±0.00 0.642±0.20
ENST00000449395 N/A 0.475±0.00 0.037±0.00 N/A 0.127±0.00 0.918±0.00 0.537±0.00 0.722±0.00 0.164±0.00 N/A N/A 0.216±0.00 N/A N/A
ENST00000465955 N/A N/A N/A N/A N/A N/A 0.691±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000470586 N/A N/A 0.123±0.00 N/A 0.570±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477633 N/A N/A 0.395±0.00 N/A N/A N/A N/A N/A N/A 1.913±0.00 N/A N/A N/A N/A
ENST00000486812 N/A N/A N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495217 N/A N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VK CIL_0001VK_0001 CGP 21:41739369-41879482
CIL_0001D3 CIL_0001D3_0002 CGP 21:41798225-41953890

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087972 prdm15 PR domain containing 15 protein_coding Danio_rerio
ENSDARG00000091516 prdm15 PR domain containing 15 protein_coding Danio_rerio
ENSMUSG00000014039 Prdm15 PR domain containing 15 protein_coding Mus_musculus

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