C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001VK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183421-ENSG00000141956 CGP 9606 21:41739369-41879482
GeneTranscriptPositionBiotype
ENSG00000183421 (RIPK4)
receptor-interacting serine-threonine kinase 4
ENST00000332512 (RIPK4-001) 41739369-41767106 protein_coding
ENST00000352483 (RIPK4-201) 41739369-41767089 protein_coding
ENSG00000227698 (AP001619.2)
ENST00000432411 (AP001619.2-001) 41874756-41877613 sense_intronic
ENSG00000236545 (AP001619.3)
ENST00000458654 (AP001619.3-001) 41870633-41872054 antisense
ENSG00000236883 (AP001615.9)
ENST00000423276 (AP001615.9-001) 41739373-41741308 antisense
CIL_0001VK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005251-ENSMUSG00000014039 CGP 10090 16:97741933-97851850
GeneTranscriptPositionBiotype
ENSMUSG00000005251 (Ripk4)
receptor-interacting serine-threonine kinase 4
ENSMUST00000019386 (Ripk4-001) 97741933-97763737 protein_coding
ENSMUST00000113743 (Ripk4-002) 97741933-97763491 protein_coding
ENSMUSG00000014039 (Prdm15)
PR domain containing 15
ENSMUST00000095849 (Prdm15-201) 97791467-97851227 protein_coding
ENSMUST00000119200 (Prdm15-008) 97835784-97848884 protein_coding
ENSMUST00000121584 (Prdm15-001) 97791520-97851850 protein_coding
ENSMUST00000126916 (Prdm15-007) 97795723-97797919 retained_intron
ENSMUST00000128917 (Prdm15-003) 97818794-97829728 retained_intron
ENSMUST00000129331 (Prdm15-005) 97835366-97839967 retained_intron
ENSMUST00000131951 (Prdm15-004) 97792332-97800302 retained_intron
ENSMUST00000135505 (Prdm15-009) 97837681-97851227 protein_coding
ENSMUST00000136529 (Prdm15-006) 97794518-97803445 processed_transcript
ENSMUST00000142295 (Prdm15-002) 97791877-97851783 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VK_0001ENSG00000183421ENST00000332512ENST00000352483ENSG00000227698ENST00000432411ENSG00000236545ENST00000458654ENSG00000236883ENST00000423276CIL_0001VK_0002ENSMUSG00000005251ENSMUST00000019386ENSMUST00000113743ENSMUSG00000014039ENSMUST00000095849ENSMUST00000119200ENSMUST00000121584ENSMUST00000126916ENSMUST00000128917ENSMUST00000129331ENSMUST00000131951ENSMUST00000135505ENSMUST00000136529ENSMUST00000142295
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VK_0001ENSG00000183421ENST00000332512ENSG00000227698ENST00000432411ENSG00000236545ENST00000458654ENSG00000236883ENST00000423276CIL_0001VK_0002ENSMUSG00000005251ENSMUST00000019386ENSMUST00000113743ENSMUSG00000014039ENSMUST00000095849ENSMUST00000121584ENSMUST00000131951ENSMUST00000136529ENSMUST00000142295
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183421 ENST00000332512 0.066±0.00 0.011±0.00 1.458±0.00 0.039±0.01 1.215±0.47 0.652±0.35 0.031±0.01 4.287±2.86 2.655±2.12 2.772±1.73 N/A 2.928±2.25 3.321±0.99 2.083±0.32
ENST00000352483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227698 ENST00000432411 N/A 0.131±0.00 N/A 0.099±0.00 0.131±0.00 N/A 0.082±0.00 0.045±0.00 0.330±0.00 0.213±0.00 N/A 0.097±0.02 0.076±0.00 0.153±0.00
ENSG00000236545 ENST00000458654 N/A N/A N/A 0.087±0.00 N/A 0.142±0.04 0.035±0.00 0.039±0.00 0.691±0.00 N/A N/A 0.200±0.00 N/A 0.100±0.00
ENSG00000236883 ENST00000423276 0.211±0.00 0.247±0.00 N/A 0.039±0.00 1.904±0.00 1.767±0.00 N/A 11.610±0.00 5.855±0.00 6.994±0.00 N/A 1.682±0.00 2.384±0.00 2.742±0.44
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005251 ENSMUST00000019386 1.437±1.41 0.150±0.06 21.606±3.81 0.339±0.07 5.486±0.95 13.648±0.63 0.202±0.12 6.057±0.48 1.545±0.28 8.954±0.65 0.030±0.01 3.009±1.03 8.771±2.70 0.683±0.17
ENSMUST00000113743 N/A N/A N/A N/A 1.471±0.00 N/A N/A N/A N/A N/A N/A 0.241±0.02 1.498±0.00 0.228±0.00
ENSMUSG00000014039 ENSMUST00000095849 N/A N/A N/A 0.794±0.21 N/A 0.813±0.00 N/A N/A N/A N/A 0.323±0.07 1.008±0.19 N/A 0.285±0.00
ENSMUST00000119200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000121584 1.635±1.07 1.202±0.43 0.959±0.58 6.067±2.55 1.486±0.75 2.069±0.77 0.736±0.08 0.853±0.63 0.906±0.40 1.390±0.58 0.586±0.31 2.628±0.73 1.416±1.00 0.547±0.13
ENSMUST00000126916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131951 1.007±0.35 1.672±0.62 N/A 1.144±0.00 1.758±0.18 1.636±0.24 0.387±0.00 0.697±0.06 0.653±0.23 0.873±0.04 N/A 2.478±0.60 0.492±0.19 N/A
ENSMUST00000135505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136529 N/A 2.274±0.00 N/A N/A 5.879±0.00 6.490±0.99 2.915±0.00 N/A 2.229±0.00 3.315±0.00 N/A 9.026±1.36 N/A N/A
ENSMUST00000142295 0.972±0.16 N/A 0.418±0.00 1.147±0.21 N/A N/A 0.251±0.00 N/A 0.393±0.06 0.576±0.00 0.191±0.04 1.466±0.53 0.788±0.16 0.399±0.06

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