C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398548 PRDM15-018 ENSG00000141956 9606 - 21:41798225-41879473 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLungOvaryPlacentaENST00000398548
Transcript ID Adipose Adrenal Brain Breast Lung Ovary Placenta
ENST00000398548 0.251±0.00 0.495±0.00 0.548±0.00 0.407±0.00 0.292±0.00 0.896±0.54 0.247±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VK CIL_0001VK_0001 CGP 21:41739369-41879482
CIL_0001D3 CIL_0001D3_0002 CGP 21:41798225-41953890

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121584 Prdm15-001 protein_coding Mus_musculus 0 3565
ENSMUST00000095849 Prdm15-201 protein_coding Mus_musculus 0 3448
ENSMUST00000142295 Prdm15-002 nonsense_mediated_decay Mus_musculus 0 2331
ENSMUST00000131951 Prdm15-004 retained_intron Mus_musculus 0 1016
ENSMUST00000136529 Prdm15-006 processed_transcript Mus_musculus 0 717
ENSMUST00000129331 Prdm15-005 retained_intron Mus_musculus 0 542
ENSMUST00000119200 Prdm15-008 protein_coding Mus_musculus 0 340
ENSMUST00000135505 Prdm15-009 protein_coding Mus_musculus 0 196

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