C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: POU class 2 homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443275 POU2F1-005 ENSG00000143190 9606 + 1:167371980-167427342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainMuscleOvaryPlacentaTestisENST00000443275
Transcript ID Bladder Brain Muscle Ovary Placenta Testis
ENST00000443275 0.440±0.00 0.683±0.00 0.265±0.00 0.737±0.49 0.272±0.00 0.611±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UH CIL_0008UH_0001 VISTA 1:167027717-167629809
CIL_00027W CIL_00027W_0002 CGP 1:167220829-167518610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0010467 TAS gene expression
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159212 Pou2f1-012 protein_coding Mus_musculus 0 2283
ENSMUST00000069609 Pou2f1-005 protein_coding Mus_musculus 0 2169
ENSMUST00000160908 Pou2f1-002 protein_coding Mus_musculus 0 2169
ENSMUST00000184643 Pou2f1-016 protein_coding Mus_musculus 0 2169
ENSMUST00000111429 Pou2f1-003 protein_coding Mus_musculus 0 2169
ENSMUST00000176942 Pou2f1-008 retained_intron Mus_musculus 0 2049
ENSMUST00000111427 POU2F1-201 protein_coding Mus_musculus 0 1982
ENSMUST00000160260 Pou2f1-001 protein_coding Mus_musculus 0 1982
ENSMUST00000027850 Pou2f1-006 protein_coding Mus_musculus 0 1844
ENSMUST00000177472 Pou2f1-015 retained_intron Mus_musculus 0 1711
ENSMUST00000111426 Pou2f1-009 protein_coding Mus_musculus 0 1709
ENSMUST00000082225 Pou2f1-010 retained_intron Mus_musculus 0 1123
ENSDART00000144272 pou2f1b-002 protein_coding Danio_rerio 0 641
ENSDART00000035522 pou2f1b-201 protein_coding Danio_rerio 0 603
ENSDART00000146480 pou2f1b-001 protein_coding Danio_rerio 0 603
ENSMUST00000178336 Cd247-201 protein_coding Mus_musculus 0 521
ENSMUST00000187313 Cd247-202 protein_coding Mus_musculus 0 521
ENSMUST00000161971 Cd247-001 protein_coding Mus_musculus 0 521
ENSDART00000147913 pou2f1b-003 protein_coding Danio_rerio 0 451
ENSMUST00000027849 Cd247-003 protein_coding Mus_musculus 0 346
ENSMUST00000161559 Cd247-002 protein_coding Mus_musculus 1.96182e-44 187
ENSMUST00000184799 Pou2f1-011 protein_coding Mus_musculus 0.00002 58

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