C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hemicentin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143341 HMCN1 9606 + 1:185734551-186190949 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000271588 HMCN1-001 185734551-186190949 protein_coding
  ENST00000414277 HMCN1-004 186171387-186189665 protein_coding
  ENST00000475585 HMCN1-005 186153826-186172118 processed_transcript
  ENST00000485744 HMCN1-003 185957069-185993437 processed_transcript
  ENST00000493413 HMCN1-002 185963808-185978145 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000271588ENST00000414277ENST00000475585
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000271588 0.979±0.00 0.122±0.00 0.014±0.00 1.835±0.63 0.446±0.13 0.447±0.00 0.285±0.00 0.259±0.22 1.366±0.15 0.055±0.00 0.365±0.13 0.412±0.00 0.258±0.00
ENST00000414277 N/A N/A N/A N/A N/A N/A N/A 0.648±0.00 N/A 0.959±0.00 N/A N/A N/A
ENST00000475585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.460±0.00 4.265±0.00 2.496±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005604 IEA basement membrane
GO:0005938 IEA cell cortex
GO:0007601 IEA visual perception
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0031012 TAS extracellular matrix
GO:0050896 IEA response to stimulus
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016936 hmcn1 hemicentin 1 protein_coding Danio_rerio
ENSMUSG00000066842 Hmcn1 hemicentin 1 protein_coding Mus_musculus

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