C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hemicentin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000016936 hmcn1 7955 - 20:34181916-34317215 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000020389 hmcn1-201 34182641-34316893 protein_coding
  ENSDART00000144705 hmcn1-001 34181916-34317215 protein_coding
  ENSDART00000153128 hmcn1-002 34183532-34188886 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000020389ENSDART00000144705ENSDART00000153128
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000020389 N/A 0.532±0.28 0.101±0.00 0.024±0.00 N/A
ENSDART00000144705 0.073±0.04 N/A N/A N/A 0.199±0.00
ENSDART00000153128 N/A 4.717±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065A CIL_00065A_0001 CGP 20:34181916-34365791

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0033333 IMP fin development
GO:0033334 IMP fin morphogenesis
GO:0071711 IMP basement membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000143341 HMCN1 hemicentin 1 protein_coding Homo_sapiens
ENSMUSG00000066842 Hmcn1 hemicentin 1 protein_coding Mus_musculus

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