C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hemicentin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000066842 Hmcn1 10090 - 1:150562524-150993435 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074783 Hmcn1-001 150562524-150993051 protein_coding
  ENSMUST00000137197 Hmcn1-003 150563527-150993051 protein_coding
  ENSMUST00000137909 Hmcn1-004 150577435-150580615 processed_transcript
  ENSMUST00000151899 Hmcn1-005 150563711-150565604 retained_intron
  ENSMUST00000155715 Hmcn1-002 150873748-150993435 retained_intron
  ENSMUST00000177036 Hmcn1-006 150563684-150583212 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074783ENSMUST00000137197ENSMUST00000137909ENSMUST00000155715ENSMUST00000177036
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074783 N/A N/A 0.316±0.00 0.146±0.01 0.536±0.00 0.159±0.00 1.021±0.11 0.063±0.01 0.147±0.02 1.630±0.00 0.052±0.01 0.523±0.49 0.106±0.07 0.031±0.01
ENSMUST00000137197 0.177±0.00 0.142±0.00 0.338±0.16 N/A 0.742±0.02 0.605±0.26 0.679±0.42 0.080±0.04 0.271±0.03 3.043±0.00 0.044±0.00 0.450±0.28 0.081±0.00 0.064±0.00
ENSMUST00000137909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.904±0.01 N/A N/A N/A
ENSMUST00000155715 N/A 0.100±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177036 N/A N/A N/A N/A N/A N/A N/A N/A 0.881±0.00 N/A N/A N/A 0.823±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00065A CIL_00065A_0002 CGP 1:150562524-151364422

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005576 IDA extracellular region
GO:0005604 IDA basement membrane
GO:0005938 IDA cell cortex
GO:0008150 ND biological_process
GO:0030054 IDA cell junction
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016936 hmcn1 hemicentin 1 protein_coding Danio_rerio
ENSG00000143341 HMCN1 hemicentin 1 protein_coding Homo_sapiens

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