C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hemicentin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000271588 HMCN1-001 ENSG00000143341 9606 + 1:185734551-186190949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000271588
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000271588 0.979±0.00 0.122±0.00 0.014±0.00 1.835±0.63 0.446±0.13 0.447±0.00 0.285±0.00 0.259±0.22 1.366±0.15 0.055±0.00 0.365±0.13 0.412±0.00 0.258±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005604 IEA basement membrane
GO:0005938 IEA cell cortex
GO:0007601 IEA visual perception
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0031012 TAS extracellular matrix
GO:0050896 IEA response to stimulus
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074783 Hmcn1-001 protein_coding Mus_musculus 0 18330
ENSMUST00000137197 Hmcn1-003 protein_coding Mus_musculus 0 16850
ENSMUST00000155715 Hmcn1-002 retained_intron Mus_musculus 0 462
ENSMUST00000151899 Hmcn1-005 retained_intron Mus_musculus 0 455
ENSMUST00000137909 Hmcn1-004 processed_transcript Mus_musculus 0 416
ENSMUST00000177036 Hmcn1-006 protein_coding Mus_musculus 0 399
ENSDART00000020389 hmcn1-201 protein_coding Danio_rerio 0 333
ENSDART00000144705 hmcn1-001 protein_coding Danio_rerio 0 333

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