C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143434 SEMA6C 9606 - 1:151131685-151146664 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341697 SEMA6C-004 151131707-151146611 protein_coding
  ENST00000368912 SEMA6C-003 151131685-151146457 protein_coding
  ENST00000368913 SEMA6C-002 151131685-151146457 protein_coding
  ENST00000368914 SEMA6C-001 151131685-151146628 protein_coding
  ENST00000464018 SEMA6C-006 151134199-151135266 processed_transcript
  ENST00000479820 SEMA6C-005 151132067-151132868 processed_transcript
  ENST00000485745 SEMA6C-008 151137712-151139461 processed_transcript
  ENST00000489944 SEMA6C-007 151134331-151134875 processed_transcript
  ENST00000613223 SEMA6C-201 151132197-151146664 protein_coding
  ENST00000621728 SEMA6C-202 151131969-151144406 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341697ENST00000368912ENST00000368913ENST00000368914ENST00000464018ENST00000613223ENST00000621728
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341697 0.343±0.00 1.157±0.00 N/A 0.503±0.41 0.665±0.59 N/A N/A 0.349±0.00 0.050±0.00 N/A N/A 1.175±0.80 0.372±0.00 2.263±1.02
ENST00000368912 N/A 0.848±0.00 N/A 0.181±0.00 1.613±0.00 N/A N/A N/A N/A N/A N/A 0.788±0.00 0.435±0.00 2.896±0.76
ENST00000368913 N/A N/A N/A N/A 2.356±0.00 1.089±0.00 N/A N/A N/A N/A 10.234±0.00 N/A N/A N/A
ENST00000368914 1.870±0.00 2.142±0.00 0.339±0.00 2.538±0.00 1.901±0.00 2.787±0.00 24.496±0.00 2.026±0.00 0.424±0.00 0.609±0.00 18.927±0.00 5.617±0.36 1.290±0.81 5.785±2.06
ENST00000464018 N/A N/A N/A N/A N/A N/A N/A 0.820±0.00 N/A N/A N/A 0.946±0.00 N/A N/A
ENST00000613223 N/A N/A N/A N/A 0.205±0.00 N/A 1.758±0.00 N/A N/A N/A 7.231±0.00 N/A N/A N/A
ENST00000621728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.898±0.00 0.637±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007411 IEA axon guidance
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030215 IEA semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000189 sema6e sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E protein_coding Danio_rerio
ENSDARG00000002748 sema6d sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein_coding Danio_rerio
ENSMUSG00000038777 Sema6c sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C protein_coding Mus_musculus

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