C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341697 SEMA6C-004 ENSG00000143434 9606 - 1:151131707-151146611 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLiverOvaryPlacentaTestisENST00000341697
Transcript ID Adipose Adrenal Brain Breast Kidney Liver Ovary Placenta Testis
ENST00000341697 0.343±0.00 1.157±0.00 0.503±0.41 0.665±0.59 0.349±0.00 0.050±0.00 1.175±0.80 0.372±0.00 2.263±1.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090821 Sema6c-004 protein_coding Mus_musculus 0 3088
ENSMUST00000168321 SEMA6C-201 protein_coding Mus_musculus 0 3042
ENSMUST00000090823 Sema6c-001 protein_coding Mus_musculus 0 2305
ENSMUST00000142449 Sema6c-002 nonsense_mediated_decay Mus_musculus 0 1749
ENSMUST00000107217 Sema6c-006 protein_coding Mus_musculus 0 1339
ENSMUST00000130662 Sema6c-011 processed_transcript Mus_musculus 0 1042
ENSMUST00000134125 Sema6c-003 retained_intron Mus_musculus 0 939
ENSMUST00000141607 Sema6c-013 retained_intron Mus_musculus 0 580
ENSMUST00000131620 Sema6c-010 nonsense_mediated_decay Mus_musculus 0 379
ENSMUST00000126597 Sema6c-012 retained_intron Mus_musculus 0 287
ENSMUST00000142306 Sema6c-008 processed_transcript Mus_musculus 0 213
ENSMUST00000131742 Sema6c-009 processed_transcript Mus_musculus 3e-39 169
ENSMUST00000130814 Sema6c-007 processed_transcript Mus_musculus 4e-38 165

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