C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000613223 SEMA6C-201 ENSG00000143434 9606 - 1:151132197-151146664 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartMuscleENST00000613223
Transcript ID Breast Heart Muscle
ENST00000613223 0.205±0.00 1.758±0.00 7.231±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090821 Sema6c-004 protein_coding Mus_musculus 0 1559
ENSMUST00000090823 Sema6c-001 protein_coding Mus_musculus 0 1559
ENSMUST00000168321 SEMA6C-201 protein_coding Mus_musculus 0 1513
ENSMUST00000142449 Sema6c-002 nonsense_mediated_decay Mus_musculus 0 1003
ENSMUST00000130662 Sema6c-011 processed_transcript Mus_musculus 0 881
ENSMUST00000107217 Sema6c-006 protein_coding Mus_musculus 0 824
ENSMUST00000134125 Sema6c-003 retained_intron Mus_musculus 0 566
ENSMUST00000131620 Sema6c-010 nonsense_mediated_decay Mus_musculus 0 379
ENSMUST00000142306 Sema6c-008 processed_transcript Mus_musculus 0 213
ENSMUST00000130814 Sema6c-007 processed_transcript Mus_musculus 0 193
ENSMUST00000131742 Sema6c-009 processed_transcript Mus_musculus 1e-39 169

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