C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038777 Sema6c 10090 + 3:95160457-95174024 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090821 Sema6c-004 95160505-95174024 protein_coding
  ENSMUST00000090823 Sema6c-001 95160505-95174024 protein_coding
  ENSMUST00000107217 Sema6c-006 95164306-95174024 protein_coding
  ENSMUST00000126597 Sema6c-012 95170805-95171976 retained_intron
  ENSMUST00000130662 Sema6c-011 95168212-95170140 processed_transcript
  ENSMUST00000130814 Sema6c-007 95160494-95164427 processed_transcript
  ENSMUST00000131620 Sema6c-010 95160494-95168346 nonsense_mediated_decay
  ENSMUST00000131742 Sema6c-009 95160501-95164481 processed_transcript
  ENSMUST00000134125 Sema6c-003 95160505-95174024 retained_intron
  ENSMUST00000141607 Sema6c-013 95170323-95171895 retained_intron
  ENSMUST00000142306 Sema6c-008 95160457-95164542 processed_transcript
  ENSMUST00000142449 Sema6c-002 95160505-95174024 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090821ENSMUST00000090823ENSMUST00000107217ENSMUST00000130662ENSMUST00000134125ENSMUST00000141607ENSMUST00000142449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090821 1.247±0.01 0.833±0.32 0.440±0.00 17.676±2.12 1.836±0.26 N/A N/A 0.437±0.14 0.153±0.03 0.590±0.10 13.764±2.18 1.670±0.30 1.022±1.13 3.407±1.08
ENSMUST00000090823 N/A N/A N/A N/A 3.189±0.31 0.255±0.10 0.941±0.32 N/A 0.099±0.02 N/A 9.753±2.14 1.689±0.00 N/A N/A
ENSMUST00000107217 N/A 0.441±0.08 N/A N/A N/A N/A N/A N/A N/A N/A 7.823±0.46 N/A 1.397±0.00 N/A
ENSMUST00000130662 N/A N/A N/A N/A 13.042±0.00 N/A N/A N/A 0.795±0.00 N/A N/A 5.869±0.00 4.428±0.00 N/A
ENSMUST00000134125 0.897±0.47 N/A N/A 7.724±2.82 N/A N/A 0.308±0.00 0.323±0.05 0.119±0.03 0.455±0.00 N/A 2.035±0.95 0.389±0.25 1.091±0.24
ENSMUST00000141607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.706±1.18 N/A
ENSMUST00000142449 1.218±0.60 1.230±0.16 N/A 4.338±0.00 2.275±0.99 0.328±0.09 0.617±0.00 0.555±0.14 0.147±0.05 0.576±0.15 N/A 2.499±0.84 0.279±0.00 1.392±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000581 CIL_000581_0003 CGP 3:95139521-95174024

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005886 IEA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0007411 IEA axon guidance
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030215 IPI semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000189 sema6e sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E protein_coding Danio_rerio
ENSDARG00000002748 sema6d sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein_coding Danio_rerio
ENSG00000143434 SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C protein_coding Homo_sapiens

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