C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143498 TAF1A 9606 - 1:222557902-222589933 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000350027 TAF1A-201 222557902-222589933 protein_coding
  ENST00000352967 TAF1A-001 222558308-222589913 protein_coding
  ENST00000366890 TAF1A-002 222557902-222589785 protein_coding
  ENST00000391883 TAF1A-005 222563285-222589759 protein_coding
  ENST00000465263 TAF1A-003 222569537-222589886 processed_transcript
  ENST00000480065 TAF1A-006 222568829-222570563 processed_transcript
  ENST00000487009 TAF1A-004 222564078-222589788 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350027ENST00000352967ENST00000366890ENST00000391883ENST00000465263ENST00000480065ENST00000487009
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350027 N/A N/A N/A 0.551±0.00 N/A 0.980±0.00 0.201±0.00 0.550±0.00 N/A N/A 0.114±0.00 1.006±0.07 N/A 1.678±0.10
ENST00000352967 0.148±0.00 0.512±0.00 0.663±0.00 0.801±0.00 0.596±0.41 0.531±0.00 0.118±0.00 0.267±0.00 0.929±0.00 1.166±0.76 N/A 1.043±0.28 0.972±0.00 1.152±0.05
ENST00000366890 0.290±0.00 0.975±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A 0.457±0.00 N/A
ENST00000391883 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.331±0.00 N/A N/A N/A N/A
ENST00000465263 0.401±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.570±0.00 N/A 1.540±0.55 0.647±0.12 1.953±0.43
ENST00000480065 N/A 0.692±0.00 N/A N/A N/A N/A N/A N/A N/A 1.284±0.00 N/A N/A N/A N/A
ENST00000487009 N/A N/A N/A 0.719±0.00 N/A 0.566±0.00 N/A 0.879±0.00 N/A 0.348±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000120 IEA RNA polymerase I transcription factor complex
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS:IEA transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0015630 IDA microtubule cytoskeleton
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052471 taf1a TATA box binding protein (TBP)-associated factor, RNA polymerase I, A protein_coding Danio_rerio
ENSMUSG00000072258 Taf1a TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A protein_coding Mus_musculus

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