C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypeptide N-acetylgalactosaminyltransferase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143641 GALNT2 9606 + 1:230057990-230282124 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366672 GALNT2-001 230067209-230282124 protein_coding
  ENST00000485438 GALNT2-002 230255358-230282120 processed_transcript
  ENST00000488903 GALNT2-005 230067259-230092033 processed_transcript
  ENST00000492568 GALNT2-003 230261951-230264972 processed_transcript
  ENST00000494106 GALNT2-004 230057990-230243427 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366672ENST00000485438
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366672 19.597±0.00 13.255±0.00 2.059±0.00 5.733±3.72 10.392±5.40 9.461±7.87 4.591±3.13 12.501±3.84 27.984±23.78 8.726±8.08 14.499±9.43 26.455±10.80 31.016±3.44 14.879±4.16
ENST00000485438 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.420±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000611 CIL_000611_0001 CGP 1:229626234-230282124
CIL_0008A0 CIL_0008A0_0001 VISTA 1:229844601-230448319
CIL_000612 CIL_000612_0001 CGP 1:230057990-230425729

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002378 IDA immunoglobulin biosynthetic process
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IDA Golgi apparatus
GO:0005795 IDA Golgi stack
GO:0006493 IDA protein O-linked glycosylation
GO:0016020 IDA membrane
GO:0016266 TAS O-glycan processing
GO:0018242 IDA protein O-linked glycosylation via serine
GO:0018243 IDA protein O-linked glycosylation via threonine
GO:0030145 IDA manganese ion binding
GO:0030173 NAS integral component of Golgi membrane
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003829 galnt2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 protein_coding Danio_rerio
ENSMUSG00000089704 Galnt2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 protein_coding Mus_musculus
ENSMUSG00000092329 Gm20388 predicted gene 20388 protein_coding Mus_musculus

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