C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366672 GALNT2-001 ENSG00000143641 9606 + 1:230067209-230282124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366672
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366672 19.597±0.00 13.255±0.00 2.059±0.00 5.733±3.72 10.392±5.40 9.461±7.87 4.591±3.13 12.501±3.84 27.984±23.78 8.726±8.08 14.499±9.43 26.455±10.80 31.016±3.44 14.879±4.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000611 CIL_000611_0001 CGP 1:229626234-230282124
CIL_0008A0 CIL_0008A0_0001 VISTA 1:229844601-230448319
CIL_000612 CIL_000612_0001 CGP 1:230057990-230425729

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002378 IDA immunoglobulin biosynthetic process
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IDA Golgi apparatus
GO:0005795 IDA Golgi stack
GO:0006493 IDA protein O-linked glycosylation
GO:0016020 IDA membrane
GO:0016266 TAS O-glycan processing
GO:0018242 IDA protein O-linked glycosylation via serine
GO:0018243 IDA protein O-linked glycosylation via threonine
GO:0030145 IDA manganese ion binding
GO:0030173 NAS integral component of Golgi membrane
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034458 Galnt2-001 protein_coding Mus_musculus 0 2017
ENSMUST00000127664 Gm20388-001 protein_coding Mus_musculus 0 1849
ENSMUST00000142578 Galnt2-004 processed_transcript Mus_musculus 0 451
ENSMUST00000142547 Galnt2-003 processed_transcript Mus_musculus 0 364
ENSMUST00000147911 Galnt2-005 processed_transcript Mus_musculus 0 302

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