C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UBX domain protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144224 UBXN4 9606 + 2:135741619-135785055 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272638 UBXN4-001 135741619-135785055 protein_coding
  ENST00000415164 UBXN4-004 135741734-135754188 protein_coding
  ENST00000416538 UBXN4-002 135741868-135761911 nonsense_mediated_decay
  ENST00000426921 UBXN4-005 135741786-135761881 nonsense_mediated_decay
  ENST00000467065 UBXN4-008 135742523-135748369 processed_transcript
  ENST00000470687 UBXN4-006 135748111-135755658 retained_intron
  ENST00000471246 UBXN4-007 135772447-135780221 retained_intron
  ENST00000490163 UBXN4-003 135754152-135785055 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272638ENST00000490163
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272638 20.420±0.00 11.447±0.00 0.786±0.00 10.560±8.02 16.536±0.00 8.405±6.20 13.504±0.00 10.866±7.59 11.567±1.78 24.830±0.00 20.461±0.00 24.471±11.64 13.149±1.15 37.395±7.69
ENST00000490163 N/A N/A N/A N/A N/A 3.393±0.00 N/A 9.854±0.00 8.063±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VO CIL_0006VO_0001 CGP 2:135531455-135785055
CIL_0003NN CIL_0003NN_0001 CGP 2:135741619-135837180

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0006986 IEA response to unfolded protein
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000026353 Ubxn4 UBX domain protein 4 protein_coding Mus_musculus

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