C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003NN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144224-ENSG00000115850 CGP 9606 2:135741619-135837180
GeneTranscriptPositionBiotype
ENSG00000115850 (LCT)
lactase 		ENST00000264162 (LCT-001) 135787840-135837180 protein_coding
ENST00000452974 (LCT-002) 135794337-135812959 nonsense_mediated_decay
ENSG00000144224 (UBXN4)
UBX domain protein 4 		ENST00000272638 (UBXN4-001) 135741619-135785055 protein_coding
ENST00000415164 (UBXN4-004) 135741734-135754188 protein_coding
ENST00000416538 (UBXN4-002) 135741868-135761911 nonsense_mediated_decay
ENST00000426921 (UBXN4-005) 135741786-135761881 nonsense_mediated_decay
ENST00000467065 (UBXN4-008) 135742523-135748369 processed_transcript
ENST00000470687 (UBXN4-006) 135748111-135755658 retained_intron
ENST00000471246 (UBXN4-007) 135772447-135780221 retained_intron
ENST00000490163 (UBXN4-003) 135754152-135785055 processed_transcript
ENSG00000226806 (AC011893.3)
 ENST00000437007 (AC011893.3-001) 135820191-135823087 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003NN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026353-ENSMUSG00000026354 CGP 10090 1:128243964-128328318
GeneTranscriptPositionBiotype
ENSMUSG00000026353 (Ubxn4)
UBX domain protein 4 		ENSMUST00000027592 (Ubxn4-001) 128244162-128279378 protein_coding
ENSMUST00000187031 (Ubxn4-004) 128259504-128273166 retained_intron
ENSMUST00000189895 (Ubxn4-005) 128274627-128277020 retained_intron
ENSMUST00000190736 (Ubxn4-003) 128243964-128259535 protein_coding
ENSMUSG00000026354 (Lct)
lactase 		ENSMUST00000073490 (Lct-001) 128284756-128328318 protein_coding
ENSMUST00000162067 (Lct-002) 128287572-128292264 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NN_0001ENSG00000115850ENST00000264162ENST00000452974ENSG00000144224ENST00000272638ENST00000415164ENST00000416538ENST00000426921ENST00000467065ENST00000470687ENST00000471246ENST00000490163ENSG00000226806ENST00000437007CIL_0003NN_0002ENSMUSG00000026353ENSMUST00000027592ENSMUST00000187031ENSMUST00000189895ENSMUST00000190736ENSMUSG00000026354ENSMUST00000073490ENSMUST00000162067
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NN_0001ENSG00000115850ENST00000264162ENST00000452974ENSG00000144224ENST00000272638ENST00000490163ENSG00000226806ENST00000437007CIL_0003NN_0002ENSMUSG00000026353ENSMUST00000027592ENSMUST00000187031ENSMUSG00000026354ENSMUST00000073490ENSMUST00000162067
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115850 ENST00000264162 N/A N/A N/A 0.003±0.00 0.008±0.00 0.035±0.00 0.031±0.00 N/A N/A N/A 0.015±0.00 0.014±0.00 N/A 0.052±0.01
ENST00000452974 N/A 0.026±0.00 N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.210±0.00 0.008±0.00 N/A 0.040±0.00
ENSG00000144224 ENST00000272638 20.420±0.00 11.447±0.00 0.786±0.00 10.560±8.02 16.536±0.00 8.405±6.20 13.504±0.00 10.866±7.59 11.567±1.78 24.830±0.00 20.461±0.00 24.471±11.64 13.149±1.15 37.395±7.69
ENST00000415164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490163 N/A N/A N/A N/A N/A 3.393±0.00 N/A 9.854±0.00 8.063±0.00 N/A N/A N/A N/A N/A
ENSG00000226806 ENST00000437007 0.019±0.00 0.089±0.00 N/A 0.020±0.00 N/A 0.029±0.00 N/A 0.044±0.00 0.049±0.00 0.080±0.06 N/A 0.026±0.00 0.014±0.00 0.041±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026353 ENSMUST00000027592 13.333±1.52 22.155±2.65 17.035±1.26 12.393±6.32 9.414±0.81 10.466±4.27 6.805±0.75 12.477±0.78 14.603±4.80 13.523±0.75 11.825±0.58 17.840±8.62 25.262±4.37 13.971±1.54
ENSMUST00000187031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.715±0.00 N/A N/A
ENSMUST00000189895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026354 ENSMUST00000073490 0.023±0.02 0.022±0.01 0.050±0.00 0.132±0.11 0.026±0.01 0.032±0.02 0.011±0.00 0.017±0.00 0.045±0.05 0.022±0.00 0.008±0.00 0.125±0.06 0.058±0.02 0.100±0.00
ENSMUST00000162067 0.076±0.00 N/A N/A N/A 0.168±0.00 0.092±0.00 N/A N/A N/A 0.072±0.00 0.052±0.00 0.118±0.04 N/A N/A

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