C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thrombospondin, type I, domain containing 7B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144229 THSD7B 9606 + 2:136765545-137677717 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272643 THSD7B-201 136882179-137677717 protein_coding
  ENST00000409968 THSD7B-001 136765545-137677717 protein_coding
  ENST00000413152 THSD7B-202 136990892-137677717 protein_coding
  ENST00000472720 THSD7B-002 136765545-137056515 nonsense_mediated_decay
  ENST00000480352 THSD7B-004 137642243-137655640 retained_intron
  ENST00000485379 THSD7B-003 137155960-137170915 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverMuscleOvaryPlacentaTestisENST00000272643ENST00000409968ENST00000413152ENST00000472720ENST00000480352ENST00000485379
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000272643 N/A 0.111±0.00 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000409968 0.220±0.00 N/A 0.199±0.00 N/A N/A N/A N/A 0.078±0.00 N/A 0.222±0.00
ENST00000413152 N/A N/A N/A 0.040±0.00 0.037±0.00 0.077±0.07 0.034±0.03 0.047±0.03 0.060±0.04 N/A
ENST00000472720 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.309±0.00
ENST00000480352 N/A N/A N/A N/A N/A 0.043±0.00 0.195±0.00 N/A N/A N/A
ENST00000485379 N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VZ CIL_0006VZ_0001 CGP 2:136114349-137677717

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061497 THSD7B (1 of 2) thrombospondin, type I, domain containing 7B protein_coding Danio_rerio
ENSDARG00000095022 thsd7ba thrombospondin, type I, domain containing 7Ba protein_coding Danio_rerio
ENSMUSG00000042581 Thsd7b thrombospondin, type I, domain containing 7B protein_coding Mus_musculus

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