C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thrombospondin, type I, domain containing 7B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042581 Thsd7b 10090 + 1:129273302-130219278 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040311 Thsd7b-002 129273463-130050352 protein_coding
  ENSMUST00000073527 Thsd7b-001 129273344-130219278 protein_coding
  ENSMUST00000140629 Thsd7b-007 129273485-129629012 processed_transcript
  ENSMUST00000140834 Thsd7b-008 130163831-130219276 processed_transcript
  ENSMUST00000143130 Thsd7b-006 130163846-130165398 processed_transcript
  ENSMUST00000148051 Thsd7b-003 129273302-129431058 retained_intron
  ENSMUST00000151700 Thsd7b-005 129915539-130183181 processed_transcript
  ENSMUST00000152305 Thsd7b-004 129537511-129629046 protein_coding
  ENSMUST00000190870 Thsd7b-009 129613275-129616043 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040311ENSMUST00000073527ENSMUST00000140629ENSMUST00000140834ENSMUST00000148051ENSMUST00000151700ENSMUST00000152305ENSMUST00000190870
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040311 0.056±0.02 0.068±0.00 0.019±0.00 N/A 0.048±0.00 0.063±0.00 0.030±0.00 0.013±0.00 0.013±0.00 0.017±0.00 N/A N/A 0.032±0.01 N/A
ENSMUST00000073527 0.086±0.03 N/A 0.063±0.02 1.429±0.61 N/A 0.033±0.00 0.031±0.01 0.008±0.00 0.018±0.01 0.049±0.00 0.045±0.01 0.235±0.10 0.003±0.00 N/A
ENSMUST00000140629 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A 0.154±0.00 N/A N/A N/A
ENSMUST00000140834 0.055±0.02 0.145±0.00 N/A N/A 0.072±0.00 0.044±0.00 N/A 0.029±0.01 0.060±0.03 0.024±0.00 0.040±0.01 0.241±0.05 0.011±0.00 6.021±0.81
ENSMUST00000148051 N/A 0.096±0.02 N/A N/A N/A 0.100±0.00 N/A 0.068±0.00 N/A 0.169±0.00 N/A 0.617±0.27 N/A N/A
ENSMUST00000151700 N/A 0.038±0.00 N/A N/A 0.026±0.00 0.028±0.00 N/A N/A 0.023±0.01 0.018±0.00 0.016±0.00 0.205±0.11 0.004±0.00 N/A
ENSMUST00000152305 0.061±0.03 0.119±0.04 0.068±0.00 N/A 0.075±0.07 0.093±0.04 0.073±0.00 0.029±0.02 0.048±0.02 0.079±0.04 0.063±0.02 0.329±0.18 0.020±0.01 N/A
ENSMUST00000190870 0.087±0.01 N/A N/A N/A 0.070±0.03 0.111±0.04 0.018±0.00 0.015±0.00 0.025±0.00 0.060±0.03 0.017±0.00 0.244±0.11 0.013±0.01 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006VZ CIL_0006VZ_0002 CGP 1:128588199-130219278

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061497 THSD7B (1 of 2) thrombospondin, type I, domain containing 7B protein_coding Danio_rerio
ENSDARG00000095022 thsd7ba thrombospondin, type I, domain containing 7Ba protein_coding Danio_rerio
ENSG00000144229 THSD7B thrombospondin, type I, domain containing 7B protein_coding Homo_sapiens

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