C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rhomboid domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144468 RHBDD1 9606 + 2:226835581-226999215 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341329 RHBDD1-001 226835936-226999215 protein_coding
  ENST00000392062 RHBDD1-201 226835955-226999201 protein_coding
  ENST00000409053 RHBDD1-011 226906712-226988498 protein_coding
  ENST00000423616 RHBDD1-005 226836050-226867206 protein_coding
  ENST00000424132 RHBDD1-004 226835581-226865097 protein_coding
  ENST00000436481 RHBDD1-006 226837548-226864856 protein_coding
  ENST00000437454 RHBDD1-002 226836034-226864844 protein_coding
  ENST00000443477 RHBDD1-003 226836044-226864711 protein_coding
  ENST00000448992 RHBDD1-008 226836056-226865065 protein_coding
  ENST00000450679 RHBDD1-007 226837524-226839607 processed_transcript
  ENST00000473218 RHBDD1-012 226906851-226914637 retained_intron
  ENST00000483268 RHBDD1-013 226935199-226995675 processed_transcript
  ENST00000491490 RHBDD1-009 226906747-226995755 retained_intron
  ENST00000493526 RHBDD1-010 226908221-226995901 processed_transcript
  ENST00000539613 RHBDD1-014 226836082-226839626 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341329ENST00000392062ENST00000409053ENST00000491490
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341329 2.841±0.00 1.965±0.00 1.247±0.00 1.201±0.00 1.932±0.49 1.234±0.00 0.975±0.00 2.518±0.00 1.371±0.00 1.953±0.00 0.822±0.00 1.710±0.78 2.152±0.42 2.230±0.35
ENST00000392062 N/A N/A 0.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.867±0.00 N/A 2.896±0.00
ENST00000409053 N/A N/A N/A N/A 9.653±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491490 N/A N/A N/A N/A N/A N/A N/A 2.491±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AO CIL_0004AO_0002 CGP 2:226731317-226999215
CIL_0004AH CIL_0004AH_0002 CGP 2:226835581-227164113

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004175 IDA endopeptidase activity
GO:0004252 IEA serine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006915 IEA apoptotic process
GO:0010954 ISS positive regulation of protein processing
GO:0016021 IEA integral component of membrane
GO:0030176 ISS integral component of endoplasmic reticulum membrane
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0031293 ISS membrane protein intracellular domain proteolysis
GO:0033619 IDA membrane protein proteolysis
GO:0034620 ISS cellular response to unfolded protein
GO:0034644 ISS cellular response to UV
GO:0043066 ISS negative regulation of apoptotic process
GO:0043687 ISS post-translational protein modification
GO:0044322 ISS endoplasmic reticulum quality control compartment
GO:0045732 IDA positive regulation of protein catabolic process
GO:0048515 ISS spermatid differentiation
GO:0051047 IMP positive regulation of secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021046 rhbdd1 rhomboid domain containing 1 protein_coding Danio_rerio
ENSMUSG00000026142 Rhbdd1 rhomboid domain containing 1 protein_coding Mus_musculus

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