C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341329 RHBDD1-001 ENSG00000144468 9606 + 2:226835936-226999215 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341329
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341329 2.841±0.00 1.965±0.00 1.247±0.00 1.201±0.00 1.932±0.49 1.234±0.00 0.975±0.00 2.518±0.00 1.371±0.00 1.953±0.00 0.822±0.00 1.710±0.78 2.152±0.42 2.230±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AO CIL_0004AO_0002 CGP 2:226731317-226999215
CIL_0004AH CIL_0004AH_0002 CGP 2:226835581-227164113

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IDA endopeptidase activity
GO:0004252 IEA serine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006915 IEA apoptotic process
GO:0010954 ISS positive regulation of protein processing
GO:0016021 IEA integral component of membrane
GO:0030176 ISS integral component of endoplasmic reticulum membrane
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0031293 ISS membrane protein intracellular domain proteolysis
GO:0033619 IDA membrane protein proteolysis
GO:0034620 ISS cellular response to unfolded protein
GO:0034644 ISS cellular response to UV
GO:0043066 ISS negative regulation of apoptotic process
GO:0043687 ISS post-translational protein modification
GO:0044322 ISS endoplasmic reticulum quality control compartment
GO:0045732 IDA positive regulation of protein catabolic process
GO:0048515 ISS spermatid differentiation
GO:0051047 IMP positive regulation of secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140020 Rhbdd1-002 protein_coding Mus_musculus 0 773
ENSMUST00000027322 Rhbdd1-001 protein_coding Mus_musculus 0 773

Loading