C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004AH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000021046-ENSDARG00000002831 CGP 7955 15:35200934-35323241
GeneTranscriptPositionBiotype
ENSDARG00000002831 (col4a4)
collagen, type IV, alpha 4 		ENSDART00000061186 (col4a4-201) 35220525-35321417 protein_coding
ENSDART00000154476 (col4a4-001) 35219728-35323241 protein_coding
ENSDARG00000003395 (col4a3)
collagen, type IV, alpha 3 		ENSDART00000049849 (col4a3-201) 35323158-35380622 protein_coding
ENSDART00000156697 (col4a3-001) 35322704-35380634 protein_coding
ENSDARG00000021046 (rhbdd1)
rhomboid domain containing 1 		ENSDART00000019976 (rhbdd1-001) 35200934-35212742 protein_coding
ENSDARG00000097433 (si:dkeyp-110b2.2)
si:dkeyp-110b2.2 		ENSDART00000155931 (si:dkeyp-110b2.2-001) 35219741-35228170 antisense
ENSDART00000157085 (si:dkeyp-110b2.2-002) 35220421-35230812 antisense
CIL_0004AH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144468-ENSG00000081052 CGP 9606 2:226835581-227164113
GeneTranscriptPositionBiotype
ENSG00000081052 (COL4A4)
collagen, type IV, alpha 4 		ENST00000396625 (COL4A4-001) 227002711-227164113 protein_coding
ENSG00000144468 (RHBDD1)
rhomboid domain containing 1 		ENST00000341329 (RHBDD1-001) 226835936-226999215 protein_coding
ENST00000392062 (RHBDD1-201) 226835955-226999201 protein_coding
ENST00000409053 (RHBDD1-011) 226906712-226988498 protein_coding
ENST00000423616 (RHBDD1-005) 226836050-226867206 protein_coding
ENST00000424132 (RHBDD1-004) 226835581-226865097 protein_coding
ENST00000436481 (RHBDD1-006) 226837548-226864856 protein_coding
ENST00000437454 (RHBDD1-002) 226836034-226864844 protein_coding
ENST00000443477 (RHBDD1-003) 226836044-226864711 protein_coding
ENST00000448992 (RHBDD1-008) 226836056-226865065 protein_coding
ENST00000450679 (RHBDD1-007) 226837524-226839607 processed_transcript
ENST00000473218 (RHBDD1-012) 226906851-226914637 retained_intron
ENST00000483268 (RHBDD1-013) 226935199-226995675 processed_transcript
ENST00000491490 (RHBDD1-009) 226906747-226995755 retained_intron
ENST00000493526 (RHBDD1-010) 226908221-226995901 processed_transcript
ENST00000539613 (RHBDD1-014) 226836082-226839626 processed_transcript
ENSG00000212391 (SNORA48)
Small nucleolar RNA SNORA48 		ENST00000391089 (SNORA48.1-205) 226968989-226969122 snoRNA
CIL_0004AH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026142-ENSMUSG00000067158 CGP 10090 1:82316452-82586849
GeneTranscriptPositionBiotype
ENSMUSG00000026142 (Rhbdd1)
rhomboid domain containing 1 		ENSMUST00000027322 (Rhbdd1-001) 82316452-82445366 protein_coding
ENSMUST00000140020 (Rhbdd1-002) 82339049-82445366 protein_coding
ENSMUST00000187475 (Rhbdd1-003) 82316642-82319730 retained_intron
ENSMUSG00000067158 (Col4a4)
collagen, type IV, alpha 4 		ENSMUST00000087050 (Col4a4-001) 82448423-82586849 protein_coding
ENSMUST00000135271 (Col4a4-002) 82538527-82586792 retained_intron
ENSMUSG00000096779 (Gm22112)
predicted gene, 22112 		ENSMUST00000117032 (Gm22112-201) 82396697-82396817 miRNA
ENSMUSG00000100786 (RP23-430H22.3)
predicted gene 28940 		ENSMUST00000187929 (RP23-430H22.3-001) 82392493-82402746 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AH_0001ENSDARG00000002831ENSDART00000061186ENSDART00000154476ENSDARG00000003395ENSDART00000049849ENSDART00000156697ENSDARG00000021046ENSDART00000019976ENSDARG00000097433ENSDART00000155931ENSDART00000157085CIL_0004AH_0002ENSG00000081052ENST00000396625ENSG00000144468ENST00000341329ENST00000392062ENST00000409053ENST00000423616ENST00000424132ENST00000436481ENST00000437454ENST00000443477ENST00000448992ENST00000450679ENST00000473218ENST00000483268ENST00000491490ENST00000493526ENST00000539613ENSG00000212391ENST00000391089CIL_0004AH_0003ENSMUSG00000026142ENSMUST00000027322ENSMUST00000140020ENSMUST00000187475ENSMUSG00000067158ENSMUST00000087050ENSMUST00000135271ENSMUSG00000096779ENSMUST00000117032ENSMUSG00000100786ENSMUST00000187929
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AH_0001ENSDARG00000002831ENSDART00000061186ENSDART00000154476ENSDARG00000003395ENSDART00000049849ENSDARG00000021046ENSDART00000019976ENSDARG00000097433ENSDART00000155931ENSDART00000157085CIL_0004AH_0002ENSG00000081052ENST00000396625ENSG00000144468ENST00000341329ENST00000392062ENST00000409053ENST00000491490ENSG00000212391ENST00000391089CIL_0004AH_0003ENSMUSG00000026142ENSMUST00000027322ENSMUST00000140020ENSMUST00000187475ENSMUSG00000067158ENSMUST00000087050ENSMUST00000135271ENSMUSG00000096779ENSMUST00000117032ENSMUSG00000100786ENSMUST00000187929
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002831 ENSDART00000061186 N/A N/A N/A 0.132±0.04 N/A N/A 0.200±0.10 0.703±0.03 0.058±0.00 N/A N/A N/A N/A N/A
ENSDART00000154476 N/A N/A N/A 0.042±0.02 N/A N/A N/A 0.100±0.00 N/A N/A 0.046±0.00 N/A N/A N/A
ENSDARG00000003395 ENSDART00000049849 N/A N/A N/A 0.029±0.00 N/A N/A 0.078±0.03 0.761±0.29 0.019±0.00 N/A 0.044±0.00 N/A N/A N/A
ENSDART00000156697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000021046 ENSDART00000019976 N/A N/A N/A 1.436±0.92 N/A N/A 4.716±0.35 3.934±0.50 0.568±0.00 N/A 3.053±0.00 N/A N/A N/A
ENSDARG00000097433 ENSDART00000155931 N/A N/A N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000157085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000081052 ENST00000396625 0.057±0.00 0.993±0.00 2.887±0.00 0.117±0.04 0.127±0.00 0.235±0.12 1.055±0.32 2.934±2.73 0.202±0.06 0.947±0.53 0.333±0.00 0.518±0.33 0.339±0.16 0.762±0.17
ENSG00000144468 ENST00000341329 2.841±0.00 1.965±0.00 1.247±0.00 1.201±0.00 1.932±0.49 1.234±0.00 0.975±0.00 2.518±0.00 1.371±0.00 1.953±0.00 0.822±0.00 1.710±0.78 2.152±0.42 2.230±0.35
ENST00000392062 N/A N/A 0.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.867±0.00 N/A 2.896±0.00
ENST00000409053 N/A N/A N/A N/A 9.653±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491490 N/A N/A N/A N/A N/A N/A N/A 2.491±0.00 N/A N/A N/A N/A N/A N/A
ENST00000493526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212391 ENST00000391089 N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A 0.154±0.00 1.277±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026142 ENSMUST00000027322 6.427±0.67 13.492±0.82 8.377±0.16 1.270±0.55 7.865±1.18 8.768±0.51 4.689±0.62 6.761±0.53 6.428±1.28 10.415±0.62 2.450±0.40 6.982±1.62 4.369±1.81 8.858±5.52
ENSMUST00000140020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.490±4.51
ENSMUST00000187475 N/A N/A N/A 0.631±0.27 N/A N/A N/A N/A N/A N/A N/A 1.330±0.00 N/A 0.589±0.00
ENSMUSG00000067158 ENSMUST00000087050 0.847±0.46 1.255±0.52 0.444±0.18 0.069±0.04 0.332±0.13 0.124±0.01 0.687±0.19 18.219±2.06 0.059±0.03 13.906±2.43 0.241±0.07 5.005±1.55 0.313±0.42 2.539±0.77
ENSMUST00000135271 N/A 2.713±0.91 N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000096779 ENSMUST00000117032 N/A N/A 19.775±10.48 12.033±8.77 N/A N/A N/A N/A 14.667±8.38 N/A N/A N/A N/A N/A
ENSMUSG00000100786 ENSMUST00000187929 0.024±0.00 0.098±0.00 0.106±0.02 0.189±0.03 0.059±0.03 0.115±0.05 0.067±0.00 0.053±0.02 0.085±0.03 0.128±0.02 N/A 0.144±0.09 0.107±0.11 0.055±0.03

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