C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM domains containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144791 LIMD1 9606 + 3:45555394-45686338 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273317 LIMD1-001 45594859-45686338 protein_coding
  ENST00000440097 LIMD1-002 45594324-45673898 protein_coding
  ENST00000465039 LIMD1-004 45555394-45673506 processed_transcript
  ENST00000474665 LIMD1-003 45665675-45674566 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000273317ENST00000440097
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000273317 2.321±0.00 1.428±0.00 1.808±0.00 1.490±0.26 2.747±0.00 2.590±0.00 3.473±1.22 2.975±1.77 1.525±0.42 1.301±0.10 1.512±0.00
ENST00000440097 N/A N/A 3.519±0.00 N/A N/A N/A N/A 1.595±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073L CIL_00073L_0001 CGP 3:45388506-45686338
CIL_00073I CIL_00073I_0001 CGP 3:45555394-45745424

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0001666 IDA response to hypoxia
GO:0002076 ISS osteoblast development
GO:0003714 ISS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005912 IDA adherens junction
GO:0005925 IDA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007010 IMP cytoskeleton organization
GO:0007165 TAS signal transduction
GO:0007275 TAS multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0008360 IMP regulation of cell shape
GO:0016310 IDA phosphorylation
GO:0016442 IDA RISC complex
GO:0016477 IMP cell migration
GO:0033962 IMP cytoplasmic mRNA processing body assembly
GO:0035195 IMP gene silencing by miRNA
GO:0035331 IDA negative regulation of hippo signaling
GO:0045668 ISS negative regulation of osteoblast differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0090090 ISS negative regulation of canonical Wnt signaling pathway
GO:2000637 IMP positive regulation of gene silencing by miRNA

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077964 LIMD1 (1 of 2) LIM domains containing 1 protein_coding Danio_rerio
ENSMUSG00000025239 Limd1 LIM domains containing 1 protein_coding Mus_musculus

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