C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domains containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000273317 LIMD1-001 ENSG00000144791 9606 + 3:45594859-45686338 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000273317
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000273317 2.321±0.00 1.428±0.00 1.808±0.00 1.490±0.26 2.747±0.00 2.590±0.00 3.473±1.22 2.975±1.77 1.525±0.42 1.301±0.10 1.512±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073L CIL_00073L_0001 CGP 3:45388506-45686338
CIL_00073I CIL_00073I_0001 CGP 3:45555394-45745424

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0001666 IDA response to hypoxia
GO:0002076 ISS osteoblast development
GO:0003714 ISS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005912 IDA adherens junction
GO:0005925 IDA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007010 IMP cytoskeleton organization
GO:0007165 TAS signal transduction
GO:0007275 TAS multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0008360 IMP regulation of cell shape
GO:0016310 IDA phosphorylation
GO:0016442 IDA RISC complex
GO:0016477 IMP cell migration
GO:0033962 IMP cytoplasmic mRNA processing body assembly
GO:0035195 IMP gene silencing by miRNA
GO:0035331 IDA negative regulation of hippo signaling
GO:0045668 ISS negative regulation of osteoblast differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0090090 ISS negative regulation of canonical Wnt signaling pathway
GO:2000637 IMP positive regulation of gene silencing by miRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026269 Limd1-201 protein_coding Mus_musculus 0 1574

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