C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gypsy retrotransposon integrase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145723 GIN1 9606 - 5:103086000-103120151 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000399004 GIN1-001 103086333-103120151 protein_coding
  ENST00000507478 GIN1-007 103087815-103097693 processed_transcript
  ENST00000508629 GIN1-003 103087813-103120097 protein_coding
  ENST00000511400 GIN1-005 103102276-103104621 processed_transcript
  ENST00000512248 GIN1-002 103086000-103120108 nonsense_mediated_decay
  ENST00000513603 GIN1-004 103106564-103120138 retained_intron
  ENST00000513747 GIN1-006 103088126-103120089 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000399004ENST00000508629ENST00000512248
Transcript ID Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000399004 1.794±0.00 N/A N/A 0.879±0.00 N/A N/A 1.730±0.00 N/A 1.860±0.00
ENST00000508629 N/A N/A N/A N/A N/A 0.846±0.00 N/A N/A N/A
ENST00000512248 N/A 0.905±0.00 0.797±0.00 1.494±0.00 1.250±0.00 0.730±0.02 1.362±0.23 0.548±0.08 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0015074 IEA DNA integration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056204 gypsy retrotransposon integrase 1 protein_coding Danio_rerio
ENSMUSG00000026333 Gin1 gypsy retrotransposon integrase 1 protein_coding Mus_musculus

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