C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gypsy retrotransposon integrase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026333 Gin1 10090 + 1:97770172-97793709 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027571 Gin1-002 97770197-97793709 protein_coding
  ENSMUST00000112842 Gin1-004 97770179-97778139 protein_coding
  ENSMUST00000112844 Gin1-001 97770172-97792969 protein_coding
  ENSMUST00000122925 Gin1-005 97770201-97771005 processed_transcript
  ENSMUST00000138142 Gin1-003 97770210-97793006 nonsense_mediated_decay
  ENSMUST00000188101 Gin1-006 97773715-97776040 retained_intron
  ENSMUST00000189031 Gin1-007 97777399-97785063 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000027571ENSMUST00000112844
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000027571 N/A N/A N/A N/A N/A N/A N/A 0.383±0.00 N/A N/A N/A
ENSMUST00000112844 2.115±0.15 1.304±0.45 3.061±0.18 2.213±0.00 1.499±0.00 1.947±0.44 4.153±1.32 1.340±0.13 3.227±1.00 4.173±0.23 4.196±0.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0015074 IEA DNA integration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056204 gypsy retrotransposon integrase 1 protein_coding Danio_rerio
ENSG00000145723 GIN1 gypsy retrotransposon integrase 1 protein_coding Homo_sapiens

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