C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gypsy retrotransposon integrase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000512248 GIN1-002 ENSG00000145723 9606 - 5:103086000-103120108 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyMuscleOvaryPlacentaENST00000512248
Transcript ID Breast Colon Heart Kidney Muscle Ovary Placenta
ENST00000512248 0.905±0.00 0.797±0.00 1.494±0.00 1.250±0.00 0.730±0.02 1.362±0.23 0.548±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0015074 IEA DNA integration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138142 Gin1-003 nonsense_mediated_decay Mus_musculus 0 1483
ENSMUST00000112844 Gin1-001 protein_coding Mus_musculus 0 1282
ENSMUST00000027571 Gin1-002 protein_coding Mus_musculus 0 905
ENSMUST00000189031 Gin1-007 nonsense_mediated_decay Mus_musculus 0 318
ENSMUST00000112842 Gin1-004 protein_coding Mus_musculus 0 204
ENSMUST00000188101 Gin1-006 retained_intron Mus_musculus 3.00018e-42 178

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