C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: gypsy retrotransposon integrase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399004 GIN1-001 ENSG00000145723 9606 - 5:103086333-103120151 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartOvaryTestisENST00000399004
Transcript ID Brain Heart Ovary Testis
ENST00000399004 1.794±0.00 0.879±0.00 1.730±0.00 1.860±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0015074 IEA DNA integration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112844 Gin1-001 protein_coding Mus_musculus 0 1701
ENSMUST00000138142 Gin1-003 nonsense_mediated_decay Mus_musculus 0 1282
ENSMUST00000027571 Gin1-002 protein_coding Mus_musculus 0 905
ENSMUST00000112842 Gin1-004 protein_coding Mus_musculus 0 427
ENSMUST00000189031 Gin1-007 nonsense_mediated_decay Mus_musculus 0 318
ENSMUST00000188101 Gin1-006 retained_intron Mus_musculus 4.00001e-41 174

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