C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 50, member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145945 FAM50B 9606 + 6:3849386-3851317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380272 FAM50B-001 3849388-3851317 protein_coding
  ENST00000380274 FAM50B-002 3849386-3851317 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380272ENST00000380274
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380272 2.960±0.00 4.684±0.00 0.905±0.00 7.556±3.09 3.316±2.25 4.790±3.41 3.281±1.90 3.869±2.07 2.011±0.91 1.153±0.21 5.324±2.41 5.203±4.06 2.545±0.60 8.574±5.97
ENST00000380274 N/A 1.233±0.00 0.445±0.00 2.080±0.00 1.950±0.00 N/A 1.375±0.00 1.693±0.00 1.584±0.00 0.885±0.00 1.849±0.00 3.034±1.06 0.722±0.48 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y7 CIL_0007Y7_0001 VISTA 6:3643401-4244038
CIL_0003IP CIL_0003IP_0001 CGP 6:3722614-3851317
CIL_0003IQ CIL_0003IQ_0001 CGP 6:3849386-4064983

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024895 fam50a family with sequence similarity 50, member A protein_coding Danio_rerio
ENSMUSG00000038246 Fam50b family with sequence similarity 50, member B protein_coding Mus_musculus

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